Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 62.8 bits (151), Expect = 9e-14
 Identities = 70/308 (22%), Positives = 122/308 (39%), Gaps = 40/308 (12%)

Query: 42  GSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAY 101
           G+     +A +       T++  P+   A +L  E++ F  +                A 
Sbjct: 26  GASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEV--------------AL 71

Query: 102 VPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDP-DSYLKMMLH 160
            P  +T    + S +  I   R+S    L      + +  VS +     P D  L+  L 
Sbjct: 72  FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLI 131

Query: 161 LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDE 220
           ++RGD  +   +  +L    Y   D  F  G++  RG ++D+FP  S  +  R++ FDDE
Sbjct: 132 VKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGS-SDPFRIDFFDDE 190

Query: 221 IECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNK 280
           I+ I  FDP     +  ++    + P   + T    I E   + +   + RR+       
Sbjct: 191 IDTIRTFDP-DNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARRE------- 242

Query: 281 LLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLP-HDGLLIID 339
              E   SQ        +++  + +GIE +       +E     TLFDYLP +  LL++ 
Sbjct: 243 --PESVYSQ--------VSKGTWPAGIEYWQPLFFEHSE-----TLFDYLPANSQLLVVG 287

Query: 340 ESHVTVPQ 347
           E    + Q
Sbjct: 288 ELEKAIDQ 295