Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., Excinuclease ABC subunit B from Sphingobium sp. HT1-2

 Score =  748 bits (1931), Expect = 0.0
 Identities = 383/670 (57%), Positives = 496/670 (74%), Gaps = 14/670 (2%)

Query: 3   KAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTII 62
           + F LVSDY+P+GDQPTAI +L+   + G   Q LLGVTGSGKTFT+A  I   QRP +I
Sbjct: 33  RPFTLVSDYEPSGDQPTAIAELVAAAKQGEKDQVLLGVTGSGKTFTMAKTIEALQRPALI 92

Query: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122
           LAPNK LAAQLYGE K+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK++SVN  I++M
Sbjct: 93  LAPNKILAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESSVNESIDRM 152

Query: 123 RLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYS 182
           R SAT+ALLER D +IVASVS +YG+G  ++Y  M   +++G + +QR+++R+L  LQY 
Sbjct: 153 RHSATRALLERDDVIIVASVSCLYGIGSVETYSAMTFSMKKGGIEDQREIIRKLVALQYK 212

Query: 183 RNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTG-VITSRDLAR 241
           RND  F RG FRV+G+ ++IFP+  +  A R+  F DEIE I  FDPL+G  + S D  +
Sbjct: 213 RNDAGFARGNFRVKGDNLEIFPSHYEDTAWRISFFGDEIEEIVEFDPLSGRKVASLDYVK 272

Query: 242 FTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNEL 301
             ++P +H+VTP   + +A+E I+ EL  R + L    KLLE QR+ QRT FD+EM+   
Sbjct: 273 --VFPNSHHVTPGPTLKQAMEAIRFELTERLKELEAEGKLLEAQRLEQRTNFDLEMIAAT 330

Query: 302 GFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKET 361
           G C+GIENYSR+L+GR  GEPPPTLF+YLP + +L +DESH TVPQIGAM +GD  RK T
Sbjct: 331 GSCAGIENYSRFLTGRLPGEPPPTLFEYLPENAVLFVDESHQTVPQIGAMARGDHRRKIT 390

Query: 362 LVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLD 421
           L E+GFRLPS +DNRPL+F+E++A+ PQT+ VSATP  +E+ ++GG  +EQV+RPTGL+D
Sbjct: 391 LAEYGFRLPSCIDNRPLRFNEWDAMRPQTVSVSATPGPWEMEQTGGVFSEQVIRPTGLID 450

Query: 422 PIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDI 481
           P +E++PV  QVDDL++E R  AA   R LVTTLTKRMAEDLTE++HE G+KVRY+HSD+
Sbjct: 451 PPVEIKPVEDQVDDLINECRKVAAQGYRTLVTTLTKRMAEDLTEFMHEAGIKVRYMHSDV 510

Query: 482 DTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMG 541
           +T+ER+E+IRDLRLGV+DVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SLIQT+G
Sbjct: 511 ETLERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIG 570

Query: 542 RAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELG 601
           RAARNV+G+ ILYAD +T SM +A++ET RRREKQ AYN+  GITP  +K+++ DI  + 
Sbjct: 571 RAARNVDGRVILYADRVTGSMERALNETSRRREKQQAYNDAHGITPFTVKKNIGDI--IA 628

Query: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661
            +A       SK     +   E   +  L    L   I  LE  M   A +LEFE A + 
Sbjct: 629 HVA-------SKDQVTVETGLEDRPH--LVGHNLRAYIEDLEKKMRAAAADLEFEEAGRI 679

Query: 662 RDEIHQLRQQ 671
           RDEI +L  +
Sbjct: 680 RDEIRKLEAE 689