Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 169 QRDMLRRLAELQ----YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECI 224
           +R  + RLA++     Y R D   +RG+F +RG ++D+FP   +++ +R++ F DEIE +
Sbjct: 138 ERIAITRLADMLQSNGYVRTDTVHDRGEFAIRGGIVDLFPG-GEEQPLRLDFFGDEIETV 196

Query: 225 SLFDPLTGVITSRDLARFTIYPKTHYVTPRERI 257
             FDP T   T+  +  FT+ P +  +   + I
Sbjct: 197 RRFDP-TDQRTTGSVDGFTLLPASEALLDEDTI 228



 Score = 36.2 bits (82), Expect = 9e-06
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 479 SDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQ 538
           S  D  ER+    D R   +DVL+   ++  GLD+P    + I  AD+ G  +    L Q
Sbjct: 857 SATDVEERMSAFYDKR---YDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQ----LYQ 909

Query: 539 TMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLA 578
             GR  R+   K   YA   T    + I ET  +R K L+
Sbjct: 910 LRGRVGRS---KTRAYA-YFTTPANRIITETAEKRLKVLS 945