Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 78/322 (24%), Positives = 132/322 (40%), Gaps = 62/322 (19%)

Query: 25  LEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNN 84
           L  + A    QT   + G+  +  +A   ++A R T++L  +   A +L  E++ F P+ 
Sbjct: 6   LPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDL 65

Query: 85  AVEYFVSY----YDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVA 140
            V  F  +    YD + P                 +  I   R+++   L E    ++V 
Sbjct: 66  PVLPFPDWETLPYDLFSP-----------------HQDIISQRIASLYRLPELSHGILVV 108

Query: 141 SVS-AIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEV 199
            ++ A++ L      L   L L  G  I+   M  RL    Y   D  +E G+F VRG +
Sbjct: 109 PITTALHRLAPTRFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGAL 168

Query: 200 IDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILE 259
           ID+FP  S +   R+++FD+EIE +  FDP T                       +R ++
Sbjct: 169 IDLFPMGS-KLPYRIDLFDNEIETLRTFDPET-----------------------QRSID 204

Query: 260 AIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGF--------CSGIENYS 311
            ++ ++  L   R++ +   + +   +   R +FD++      F         +GIE Y 
Sbjct: 205 KVDSVR--LLPAREFPMQKEE-VTRFKARFRERFDVDFRRSAIFQDLASGIIPAGIEYYL 261

Query: 312 RYLSGRAEGEPPPTLFDYLPHD 333
                    E   TLFDYLP D
Sbjct: 262 PLFF-----EETSTLFDYLPTD 278



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 33/130 (25%)

Query: 471 GVKVRYLHSDIDTVER-----VEIIRDLRLGV---------------------FDVLVGI 504
           G +V YLH+D+ T+E+      E++ + R+G+                     F+VLV  
Sbjct: 811 GGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVAS 870

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +T + +K
Sbjct: 871 TIIETGIDVPSANTIVIERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRQK 923

Query: 565 AIDETERRRE 574
              + E+R E
Sbjct: 924 VSADAEKRLE 933