Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., excinuclease UvrABC protein B from Pseudomonas putida KT2440

 Score =  951 bits (2459), Expect = 0.0
 Identities = 480/675 (71%), Positives = 576/675 (85%), Gaps = 11/675 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F+LV+ +QPAGDQP AI+QL+EG+EAGL+HQTLLGVTGSGKTF++ANVI   QRPT++LA
Sbjct: 4   FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLYGE KAFFPNNAVEYFVSYYDYYQPEAYVP++DTFIEKDAS+N HIEQMRL
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           SATKALLER+DA+IV +VS IYGLG P++YLKM+LH+ RGD ++QR +LRRLA+LQY+RN
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           +M F R  FRVRG+VIDIFPAESD EA+R+E+FDDE+E I+ FDPLTG +  R L RFT 
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEV-FRKLPRFTF 242

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YPK+HYVTPRE +LEA+E IK EL+ R +YL   NKL+E QR+ QRT+FD+EM+ ELG+C
Sbjct: 243 YPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYC 302

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
           +GIENYSRYLSGR  G PPPTL+DYLP D LL+IDESHV+VPQ+GAM+KGDRSRKETLVE
Sbjct: 303 NGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVE 362

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           +GFR+PSALDNRP++FDE+E ++PQTIFVSATP  YE  +  G V EQVVRPTGL+DP +
Sbjct: 363 YGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYE-AEHAGRVVEQVVRPTGLVDPQV 421

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
           EVRP  TQVDDLLSE R R A  ER+L TTLTKRMAEDL++YL +H V+VRYLHSDIDTV
Sbjct: 422 EVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTV 481

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+GRAA
Sbjct: 482 ERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDI- 603
           RN+NG+AILYAD++T SM++AIDETERRREKQ+A+NE  GI P+ + + + DIME   + 
Sbjct: 542 RNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGATVP 601

Query: 604 -AKSRKQKNSKVVPLAKVAEESAAY--QVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQ 660
            A+S+K+K      +AK AEESA Y  ++ TP ++ K I +LE  M Q A++LEFE AAQ
Sbjct: 602 GARSKKRKG-----MAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656

Query: 661 KRDEIHQLRQQFIAN 675
            RDEI QLR++ I++
Sbjct: 657 LRDEIAQLRERLISS 671