Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 42  GSGKTFTLANVIATAQ---RPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQP 98
           GS     LA + A  +   R T I+  +   A +L  EM  F P      F        P
Sbjct: 19  GSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCALF--------P 70

Query: 99  EAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMM 158
           +      DTF      ++  +  +   + +      D V++ + +A+Y L  P       
Sbjct: 71  DWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAGYT 130

Query: 159 LHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFD 218
            H +    +++  +  +L    Y         G++ VRG +ID+FP  S     RV++FD
Sbjct: 131 FHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGS-LVPYRVDLFD 189

Query: 219 DEIECISLFDP 229
           DEI+ I  FDP
Sbjct: 190 DEIDSIRTFDP 200



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 40/248 (16%)

Query: 334 GLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDN--RPLKFDEFEALAPQTI 391
           GLLIIDE H    +     K  R+  + L      +P  L      L+     A APQ  
Sbjct: 733 GLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRR 792

Query: 392 FVSATPSEYELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERIL 451
               T   +   +  G + E V+R                   +L    ++   ++E   
Sbjct: 793 LAIKT---FVRNEGNGVIREAVLR-------------------ELKRGGQVYFLHNEVET 830

Query: 452 VTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGL 511
           +    +++ E L E       ++   H  +   E   ++RD     F+VL+   ++  G+
Sbjct: 831 IENRRQKLEEILPE------ARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGI 884

Query: 512 DMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILY-----ADSITKSMRKAI 566
           D+P    + +  ADK G  +    L Q  GR  R+ + +A  Y      + +TK   + +
Sbjct: 885 DVPTANTIVMSRADKFGLAQ----LHQLRGRVGRS-HHQAYAYLMVPDIEGLTKHAAQRL 939

Query: 567 DETERRRE 574
           D  ++  E
Sbjct: 940 DAIQQMEE 947