Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1159 a.a., transcription-repair coupling factor from Magnetospirillum magneticum AMB-1

 Score = 52.8 bits (125), Expect = 9e-11
 Identities = 79/376 (21%), Positives = 145/376 (38%), Gaps = 51/376 (13%)

Query: 159 LHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFD 218
           L  R+G  ++   ++  L++  Y R D   E G++ VRG ++D++P  S  E +R++ F 
Sbjct: 130 LDARKGSRLSMDKLIGFLSKNGYVRADTVMEPGEYAVRGGIVDLYPPGS-AEPLRLDFFG 188

Query: 219 DEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDN 278
           DEI+ +  FDP++   T+  +A F   P +      E  L+     +     R  + + +
Sbjct: 189 DEIDSVRSFDPMS-QRTTGPMAGFVCRPVS------EVGLDDASIARFRTNYREMFGVIS 241

Query: 279 NKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLII 338
                 + IS+  +F           +G+E++        +     TLF Y+P   +++ 
Sbjct: 242 GPDPLYEAISEGIKF-----------NGMEHWLPLFHDGLD-----TLFAYVPEAAVVLD 285

Query: 339 DESHVTVPQIGAMFKGDRSRKETLVEFGFR---------LPSALDNRPLKFDEFEALAPQ 389
            +S   +    A+       +  L   G           LP  L     ++D   A  P 
Sbjct: 286 HQSDEALTARHALVLEYFDARAGLAGAGLTESGMVYHPILPERLYLERAEWDRLLAARPV 345

Query: 390 TIF--VSATPSEYELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAAND 447
                  A   +     +GG +              +  RP     D +   A  +A   
Sbjct: 346 LHLSPFDAVEGDEGAVDAGGRLGRDFAD--------MRARPGVNVYDCVREHAEEQAKAG 397

Query: 448 ERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLL 507
            R+++   T+   + L   L +HG+K       I+TVE     + L  G   V V +  L
Sbjct: 398 RRVVIAAWTQGSRDRLAGVLRDHGIK------GIETVESWAEAQGLDKG--RVAVAVLGL 449

Query: 508 REGLDMPEVALVAILD 523
             G   P++A++   D
Sbjct: 450 DHGFATPDLAVITEQD 465



 Score = 36.6 bits (83), Expect = 7e-06
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 458 RMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVA 517
           R+AE L + + E  VK    H  +   +  E++       +DVL+  N++  G+DMP V 
Sbjct: 837 RVAERLAKLVPE--VKTAVAHGRLAPADLEEVMVAFGEKQYDVLLSTNIIESGIDMPSVN 894

Query: 518 LVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYA 555
            + I  AD  G       L Q  GR  R   GK   YA
Sbjct: 895 TLIIHRADMFGL----GQLYQLRGRVGR---GKTRGYA 925