Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 52/330 (15%)

Query: 40  VTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPN---NAVEYFVSYYDYY 96
           +TG+     +A +      P +++AP+   A +L+ E++ F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 97  QPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLK 156
            P                 +  I   RLS    L   +  V++  V+ +     P SYL 
Sbjct: 82  SP-----------------HQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLH 124

Query: 157 -MMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVE 215
              L +++G  +++  +  +L    Y   D   E G++  RG ++D+FP  S+Q   R++
Sbjct: 125 GHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PYRLD 183

Query: 216 MFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYL 275
            FDDEI+ + LFD  T   T  ++    + P   + T +     AIE  +S+ +   +  
Sbjct: 184 FFDDEIDSLRLFDADT-QRTLEEVEAINLLPAHEFPTDK----AAIELFRSQWRDTFEVK 238

Query: 276 LDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGL 335
            D   +   Q++S+ T             +GIE    Y       EP P LF Y P + L
Sbjct: 239 RDAEHIY--QQVSKGT-----------LPAGIE----YWQPLFFSEPLPPLFSYFPANTL 281

Query: 336 LIIDESHVTVPQIGAMFKGDRSRKETLVEF 365
           ++   S  T          +R + +TL  F
Sbjct: 282 VVNTGSLET--------SAERFQADTLARF 303



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 457 KRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEV 516
           ++ AE L E + E  + +   H  +   E   ++ D     F+VLV   ++  G+D+P  
Sbjct: 823 QKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 517 ALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRRE 574
             + I  AD  G  +    L Q  GR  R+ +     YA  +T   +    + ++R E
Sbjct: 881 NTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAWLLTPHPKAMTTDAQKRLE 931