Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., excinuclease ABC subunit B (NCBI) from Escherichia coli BW25113

 Score = 1020 bits (2638), Expect = 0.0
 Identities = 521/677 (76%), Positives = 592/677 (87%), Gaps = 5/677 (0%)

Query: 1   MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPT 60
           MSK F+L S ++P+GDQP AI++L EGLE GLAHQTLLGVTGSGKTFT+ANVIA  QRPT
Sbjct: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60

Query: 61  IILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE 120
           ++LAPNKTLAAQLYGEMK FFP NAVEYFVSYYDYYQPEAYVP++DTFIEKDASVN HIE
Sbjct: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120

Query: 121 QMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQ 180
           QMRLSATKA+LER+D V+VASVSAIYGLGDPD YLKMMLHL  G +I+QR +LRRLAELQ
Sbjct: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180

Query: 181 YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA 240
           Y+RND AF+RG FRVRGEVIDIFPAESD  A+RVE+FD+E+E +SLFDPLTG I S  + 
Sbjct: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IP 239

Query: 241 RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNE 300
           RFTIYPKTHYVTPRERI++A+E+IK EL  RR+ LL+NNKLLEEQR++QRTQFD+EMMNE
Sbjct: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299

Query: 301 LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKE 360
           LG+CSGIENYSR+LSGR  GEPPPTLFDYLP DGLL++DESHVT+PQIG M++GDR+RKE
Sbjct: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359

Query: 361 TLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLL 420
           TLVE+GFRLPSALDNRPLKF+EFEALAPQTI+VSATP  YEL KSGG+V +QVVRPTGLL
Sbjct: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419

Query: 421 DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD 480
           DPIIEVRPVATQVDDLLSE R RAA +ER+LVTTLTKRMAEDLTEYL EHG +VRYLHSD
Sbjct: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479

Query: 481 IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTM 540
           IDTVER+EIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+
Sbjct: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539

Query: 541 GRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMEL 600
           GRAARNVNGKAILY D IT SM KAI ETERRREKQ  YNE+ GITPQ L + V DI+ L
Sbjct: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599

Query: 601 G-DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
           G +IAK++ +   K  P   + E       ++P+ L+++I +LE  M QHAQNLEFE AA
Sbjct: 600 GQNIAKTKAKGRGKSRP---IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656

Query: 660 QKRDEIHQLRQQFIANS 676
           Q RD++HQLR+ FIA S
Sbjct: 657 QIRDQLHQLRELFIAAS 673