Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1147 a.a., transcription-repair coupling factor from Erwinia tracheiphila SCR3

 Score = 75.1 bits (183), Expect = 2e-17
 Identities = 74/299 (24%), Positives = 131/299 (43%), Gaps = 38/299 (12%)

Query: 40  VTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPE 99
           +TG+      A +IA  Q P +++ P+   A +L+ E+K F      E  ++  D+    
Sbjct: 22  LTGAACAVESAEIIARHQGPVVLITPDMQNALRLHDEIKQF----TCETVINLADW---- 73

Query: 100 AYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLK-MM 158
                 +T      S +  I   RLS   AL      V++  V+ +  L  P S+L    
Sbjct: 74  ------ETLPFDSFSPHQEIISSRLSTLHALPYMAHGVLILPVNTLMQLVCPHSFLHGHA 127

Query: 159 LHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFD 218
           L +++G  +++  +  +L +  Y   D   E G++  RG ++DIFP  S Q   R+++FD
Sbjct: 128 LVMKKGQHLSRDTLRSQLEQAGYRHVDQVMEHGEYATRGALLDIFPMGSLQ-PYRIDLFD 186

Query: 219 DEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDN 278
           +EI+ + LFD +    T  +++   + P   + T +  I     + +    VRR      
Sbjct: 187 EEIDSLRLFD-VDSQRTLEEVSAINLLPAHEFPTDKTAIELFRTRWREHFDVRR------ 239

Query: 279 NKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLI 337
               E + I Q+       +++    +GIE    Y       +P   LF YLP + LL+
Sbjct: 240 ----EPEHIYQQ-------VSKGTLPAGIE----YWQPLFFDQPLVPLFSYLPANSLLV 283



 Score = 30.8 bits (68), Expect = 4e-04
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 44/156 (28%)

Query: 430 ATQVDDLLSEARIRAANDERILVTTLTKRMA--------EDLT---EYLHE--HGVKVRY 476
           AT +   L+ A +    D  I+ T  T+R+A        +DL      L E   G +V Y
Sbjct: 756 ATPIPRTLNMA-MSGMRDLSIIATPPTRRLAVKTFVREFDDLVVREAILREVLRGGQVYY 814

Query: 477 LHSDIDTVERV-----EIIRDLRLGV---------------------FDVLVGINLLREG 510
           L++D++ +E+      E++ + R+ +                     F+VLV   ++  G
Sbjct: 815 LYNDVENIEKATRRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874

Query: 511 LDMPEVALVAILDADKEGFLRSERSLIQTMGRAARN 546
           +D+P    + I  AD  G  +    L Q  GR  R+
Sbjct: 875 IDIPTANTIIIERADHFGLAQ----LHQLRGRVGRS 906