Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., Excinuclease ABC subunit B from Enterobacter asburiae PDN3

 Score = 1018 bits (2632), Expect = 0.0
 Identities = 524/677 (77%), Positives = 591/677 (87%), Gaps = 7/677 (1%)

Query: 1   MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPT 60
           MSK F+L S ++P+GDQP AI++L EGLE GLAHQTLLGVTGSGKTFT+ANVIA  QRPT
Sbjct: 1   MSKPFKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60

Query: 61  IILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE 120
           ++LAPNKTLAAQLYGEMK FFP NAVEYFVSYYDYYQPEAYVP++DTFIEKDASVN HIE
Sbjct: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120

Query: 121 QMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQ 180
           QMRLSATKALLER+D V+VASVSAIYGLGDPD YLKMMLHL +G +I+QR ++RRLAELQ
Sbjct: 121 QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAIVRRLAELQ 180

Query: 181 YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA 240
           Y+RND AF+RG FRVRGEVIDIFPAESD  A+RVE+FD+E+E +SLFDPLTG + S  + 
Sbjct: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGHVESV-IQ 239

Query: 241 RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNE 300
           RFTIYPKTHYVTPRERI++A+E+IK EL  RR+ LL NNKLLEEQR+SQRTQFD+EMMNE
Sbjct: 240 RFTIYPKTHYVTPRERIVQAMEEIKVELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNE 299

Query: 301 LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKE 360
           LG+CSGIENYSR+LSGR  GEPPPTLFDYLP DGLL+IDESHVT+PQIG M++GDR+RKE
Sbjct: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKE 359

Query: 361 TLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLL 420
           TLVE+GFRLPSALDNRP+KF+EFEALAPQTI+VSATP  YEL KSG +V +QVVRPTGLL
Sbjct: 360 TLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLL 419

Query: 421 DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD 480
           DPIIEVRPVATQVDDLLSE R R+A +ER+LVTTLTKRMAEDLTEYL EHG KVRYLHSD
Sbjct: 420 DPIIEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSD 479

Query: 481 IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTM 540
           IDTVER+EIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+
Sbjct: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539

Query: 541 GRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMEL 600
           GRAARNVNGKAILY D IT SM KAI ETERRREKQ  YNE+ GITPQ L + V DI+ L
Sbjct: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDILAL 599

Query: 601 G-DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
           G +IAK++ +   K      V EE     VLTP+ L+++I +LE  M QHAQNLEFE AA
Sbjct: 600 GQNIAKTKAKGRGKA---RSVVEEDTV--VLTPKALQQKIHELEGQMMQHAQNLEFEEAA 654

Query: 660 QKRDEIHQLRQQFIANS 676
           Q RD++HQLR  FIA S
Sbjct: 655 QIRDQLHQLRDLFIAAS 671