Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

 Score = 69.7 bits (169), Expect = 7e-16
 Identities = 71/302 (23%), Positives = 130/302 (43%), Gaps = 44/302 (14%)

Query: 40  VTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPN---NAVEYFVSYYDYY 96
           +TG+     +A +      P I++AP+   A +L+ E++ F  +   +  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSLVFSLADWETLPYDSF 81

Query: 97  QPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLK 156
            P                 +  I   RLS    L   +  V++  V+ +     P SYL 
Sbjct: 82  SP-----------------HQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLH 124

Query: 157 -MMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVE 215
              L +++G  +++  +  +L    Y   D   E G++  RG ++D++P  SDQ   R++
Sbjct: 125 GHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQ-PYRLD 183

Query: 216 MFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYL 275
            FDDEI+ + +FD  T   T  ++    + P   + T +     AIE  +S+ + + +  
Sbjct: 184 FFDDEIDSLRVFDADT-QRTLEEVESINLLPAHEFPTDK----TAIELFRSQWRDKFEVK 238

Query: 276 LDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGL 335
            D   +   Q++S+ T             +GIE    Y       EP P LF Y P + L
Sbjct: 239 RDAEHIY--QQVSKGT-----------LPAGIE----YWQPLFFNEPLPALFSYFPANTL 281

Query: 336 LI 337
           ++
Sbjct: 282 IV 283



 Score = 30.0 bits (66), Expect = 6e-04
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 457 KRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEV 516
           ++ A+ L E + E  + +   H  +   E   ++ D     F+VLV   ++  G+D+P  
Sbjct: 823 QKAADRLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 517 ALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRRE 574
             + I  AD  G  +    L Q  GR  R+ +     YA  +T   +    + ++R E
Sbjct: 881 NTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAWLLTPHPKAMTTDAQKRLE 931