Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

 Score = 75.1 bits (183), Expect = 2e-17
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 39/305 (12%)

Query: 35  QTLLG-VTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYY 93
           Q LLG +TG+      A ++       +++ P+   A +L  E++ F             
Sbjct: 16  QRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTA----------- 64

Query: 94  DYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDS 153
              QP   +P  +T      S +  I   RLS    L      V++  V+ +     P +
Sbjct: 65  ---QPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHA 121

Query: 154 YLK-MMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAV 212
           +L    L L++G  +++  +  +L +  Y   D   E G+F  RG ++D+FP  S +E  
Sbjct: 122 FLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGS-EEPF 180

Query: 213 RVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRR 272
           R++ FDDEI+ + LFD  T   T  ++ +  + P   + T +     AIE  +S  Q R 
Sbjct: 181 RIDFFDDEIDSLRLFDADT-QRTLNEVEQIHLLPAREFPTDK----TAIELFRS--QWRE 233

Query: 273 QYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPH 332
           Q+ +  +     Q++S+ T             +GIE    Y       +P P LF YLP 
Sbjct: 234 QFEVRRDAEHVYQQVSKGT-----------LPAGIE----YWQSLFFNQPLPALFSYLPT 278

Query: 333 DGLLI 337
             LL+
Sbjct: 279 GTLLV 283



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 33/130 (25%)

Query: 471 GVKVRYLHSDIDTVERV-----EIIRDLRLGV---------------------FDVLVGI 504
           G +V YL++D++ +E+      E++ + R+ +                     F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKAAQQLNELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +     YA  +T + + 
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPNPKA 921

Query: 565 AIDETERRRE 574
             ++  +R E
Sbjct: 922 MSNDAHKRLE 931