Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., excinuclease ABC subunit B from Dickeya dianthicola ME23

 Score = 1016 bits (2626), Expect = 0.0
 Identities = 515/676 (76%), Positives = 591/676 (87%), Gaps = 6/676 (0%)

Query: 1   MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPT 60
           M+KAF+L SD++PAGDQP AI++L +GLE GLAHQTLLGVTGSGKTFT+ANVIA   RPT
Sbjct: 1   MNKAFKLHSDFKPAGDQPEAIRRLEDGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPT 60

Query: 61  IILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE 120
           ++LAPNKTLAAQLYGEMKAFFP NAVEYFVSYYDYYQPEAYVP++DTFIEKDASVN HIE
Sbjct: 61  MVLAPNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120

Query: 121 QMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQ 180
           QMRLSATKALLER+D V+VASVSAIYGLGDPD YLKMMLHL +G +I+QR +LRRLAELQ
Sbjct: 121 QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ 180

Query: 181 YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA 240
           Y+RND AF RG FRVRGE+IDIFPAES+  A+RVE+FD+E+E +SLFDPLTG I  + + 
Sbjct: 181 YARNDQAFARGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIV-QTVP 239

Query: 241 RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNE 300
           R+TIYPKTHYVTPRERIL+A+E+IK EL  RRQ LL  NKLLEEQR++QRT FD+EMMNE
Sbjct: 240 RYTIYPKTHYVTPRERILQAMEEIKVELADRRQVLLAGNKLLEEQRLAQRTTFDLEMMNE 299

Query: 301 LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKE 360
           LG+CSGIENYSR+LSGR  GEPPPTLFDYLP DGLL+IDESHVT+PQ+G M++GDR+RKE
Sbjct: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKE 359

Query: 361 TLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLL 420
           TLVE+GFRLPSALDNRP+KF+EFEALAPQTI+VSATP  YEL KSGGEV +QVVRPTGLL
Sbjct: 360 TLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLL 419

Query: 421 DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD 480
           DP +EVRPV TQVDDLLSE R RA  +ER+LVTTLTKRMAEDLTEYL EHG +VRYLHSD
Sbjct: 420 DPQLEVRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479

Query: 481 IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTM 540
           IDTVERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+
Sbjct: 480 IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539

Query: 541 GRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMEL 600
           GRAARN+NGKAILYAD IT SM +A++ET+RRREKQ AYNEQ GI PQ L + + D++++
Sbjct: 540 GRAARNLNGKAILYADRITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDLLQI 599

Query: 601 GDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQ 660
           G  A  R +   K     K AE +A YQ L+P+ L+++I +LE+ M  HAQNLEFE AA+
Sbjct: 600 GQSANGRGKGRGK-----KAAEPAAQYQQLSPKALDQKIRELESQMLTHAQNLEFEEAAR 654

Query: 661 KRDEIHQLRQQFIANS 676
            RDEIH LR+QFIA S
Sbjct: 655 LRDEIHALREQFIAAS 670