Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 53.9 bits (128), Expect = 4e-11
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 18/217 (8%)

Query: 16  DQPTAIKQLLEGLEAGLAHQ-TLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLY 74
           +Q + IK + + +++ +       G++GS     LA  I       +I+A +K  AA L 
Sbjct: 11  EQDSYIKTVAKTIQSSVGSNFAFKGISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLA 70

Query: 75  GEMKAFFPNNAVEYFVSYYDY-YQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALL-E 132
            ++ +         F S Y   YQ E          E D   NA++        K L  +
Sbjct: 71  SDLSSLLDRVTPHIFPSSYKRPYQHE----------EVD---NANVLMRAEILNKVLSSD 117

Query: 133 RKDAVIVASVSAIYG-LGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERG 191
            K  +IV+   A+Y  + +  S  +     + G+ ++   +   L+   + + D  +E G
Sbjct: 118 TKMEIIVSYPEALYEKVINKKSLQENTFTAKVGEKVDVEFITELLSTYDFEKTDFVYEPG 177

Query: 192 QFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFD 228
           QF +RG +ID+F + +++   R+E+F  EIE I  FD
Sbjct: 178 QFAIRGGIIDVF-SFANEYPYRIELFGKEIESIRTFD 213



 Score = 37.4 bits (85), Expect = 4e-06
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 473 KVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRS 532
           K+   H  +D  +  +I+     G FDVLV  N++  GLD+P    + I  A   G    
Sbjct: 797 KIAGAHGQMDGKQLEKIMVKFIEGEFDVLVSTNIIESGLDIPNANTIIINRAHMFGL--- 853

Query: 533 ERSLIQTMGRAARNVNGKAILY-----ADSITKSMRKAIDETE 570
              L Q  GR  R+ N KA  Y        +T   RK +   E
Sbjct: 854 -SDLHQMRGRVGRS-NKKAYCYLLTSPMSGLTAEARKRLQTLE 894



 Score = 30.0 bits (66), Expect = 6e-04
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 440 ARIRAANDER---ILVTTLTKRMAEDLT--EYLHEHGVKVRYLHSDIDTVERVEIIRDLR 494
           A  +A ND +   +LV T    M    T  E L    VKV Y++    T +  EI + + 
Sbjct: 601 AAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYINRFRTTKQVKEITKQVT 660

Query: 495 LGVFDVLVGIN-LLREGLDMPEVALVAILDADKEG 528
            G  D+LVG + ++ + +   ++ L+ I +  K G
Sbjct: 661 SGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFG 695