Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., excinuclease ABC, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  714 bits (1844), Expect = 0.0
 Identities = 371/666 (55%), Positives = 491/666 (73%), Gaps = 11/666 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F+++SDY P GDQP AIK L EG+ +G   Q LLGVTGSGKTFT+ANVI   QRPT++L 
Sbjct: 3   FKIISDYSPTGDQPNAIKNLSEGISSGEPSQVLLGVTGSGKTFTVANVIQEVQRPTLVLC 62

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
            NKTLAAQLYGE K FFP+NAVEYF+SYYDYYQPEA++PT+  +IEKD S+N  IE++RL
Sbjct: 63  HNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFIPTSGVYIEKDLSINEEIEKLRL 122

Query: 125 SATKALLE-RKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
           SAT ALL  R+D ++VASVS IYG+G+P+ + K +++L  G  I +  +L +L ++ YSR
Sbjct: 123 SATSALLSGRRDVIVVASVSCIYGIGNPEEFGKNVVNLEEGQRIPRNQLLFQLVDILYSR 182

Query: 184 NDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFT 243
            ++ F+ G FRV+G+ +DIF A +D  A R+  + DEIE I   DP TG   S +  + T
Sbjct: 183 ANVEFKHGTFRVKGDTVDIFVAYADF-AYRIYFWGDEIEGIQRIDPETGKRISSE-KQIT 240

Query: 244 IYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGF 303
           I+P   +VT +E I  AI++I+ +L  +  +   + +L E  R+ +RT+FD+EM+ ELG+
Sbjct: 241 IFPANLFVTGKETIDVAIKEIQDDLMSQISFFEKDMRLEEASRLRERTEFDLEMIRELGY 300

Query: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 363
           CSG+ENYSRY   R+ G  P  L DY P D +L+IDESHVTVPQI AM+ GDRSRK  LV
Sbjct: 301 CSGVENYSRYFDRRSAGARPFCLLDYFPDDYMLVIDESHVTVPQIRAMWGGDRSRKVNLV 360

Query: 364 EFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPI 423
           E+GFRLPSALDNRPLKFDEFE+L  Q I+VSATP++YEL ++ G V EQ++RPTGLLDP+
Sbjct: 361 EYGFRLPSALDNRPLKFDEFESLTNQVIYVSATPADYELNQTDGVVVEQIIRPTGLLDPL 420

Query: 424 IEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDT 483
           IEVRP   Q+DDLL E        +R+LVTTLTKRMAE+L ++L   G+K RY+HS++ +
Sbjct: 421 IEVRPSGDQIDDLLEEIDQTIKKGDRVLVTTLTKRMAEELNKFLERAGIKSRYIHSEVKS 480

Query: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRA 543
           ++RVEI+R+LRLG+FDVLVG+NLLREGLD+PEV+LVAILDADKEGFLR+ERSL+QT+GRA
Sbjct: 481 LDRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTIGRA 540

Query: 544 ARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDI 603
           ARN NG+ I+YAD +T SM++AIDET+RRR  Q+AYNE+ GITP+ + +S   IM    +
Sbjct: 541 ARNENGRVIMYADRVTASMQRAIDETKRRRSIQMAYNEEHGITPKTVIKSKDKIMGQTKV 600

Query: 604 AKSRKQKNSKVVPLAKVAEESA-----AYQVLTPQQLEKEISKLEAAMYQHAQNLEFELA 658
           A S+  KN+K        EE+A       Q L+ ++LEK I + +  M + A+ L F  A
Sbjct: 601 ADSK--KNAKFYD-DHFTEENAYAADPVVQYLSKEKLEKLIPQTQKQMEKAAKELNFMEA 657

Query: 659 AQKRDE 664
           A+ RDE
Sbjct: 658 ARLRDE 663