Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 109/499 (21%), Positives = 184/499 (36%), Gaps = 88/499 (17%)

Query: 89  FVSYYDYYQPEAYV---PTTDTFIEKDASVNAHIEQMRLSATKALLERKDA----VIVAS 141
           FV  + ++  +  V   P  D       S  A I   R++    L  RK      ++V +
Sbjct: 49  FVQAFQFFSKDIEVLDYPAWDCLPYDRLSPTAGIAAQRMATLTRLAMRKPGDAPVLVVTT 108

Query: 142 VSAIYGLGDPDSYLKMM-LHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVI 200
           VSA      P S         + G  ++ + + R  A   Y R     ERG+F VRG V+
Sbjct: 109 VSAAMQRTPPKSVTTQAGFETKVGRDLDIQALERYFAANGYVRASTVSERGEFAVRGGVV 168

Query: 201 DIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEA 260
           D++P    +E VR++MF  E+E I  FDP T   T + +   ++ P          + EA
Sbjct: 169 DVYP-PGFEEPVRLDMFGSELESIRTFDPETQRSTGQ-MTFVSLAP----------VSEA 216

Query: 261 IEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSG-RAE 319
                               LL+   IS   +F    +N  G       Y+    G R +
Sbjct: 217 --------------------LLDAAAIS---RFRTGYLNLFGAPGDDPLYATISEGARRQ 253

Query: 320 G---------EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLP 370
           G         E   +LFDYLP D  + +D    T           R+ +  LV   +   
Sbjct: 254 GMEQWLPLFYETLDSLFDYLPDDAAIFLDNQVETA----------RAERWDLVADAYDAR 303

Query: 371 SALDNRPLKFDEFEALAPQTIFVSATPSEYELT----------KSGGEVAEQVVRPTGLL 420
           +       +     AL P+ +++ A      L            +GGE A   +  T   
Sbjct: 304 AEAAKAKGQASANRALPPKRLYLDAGDWNQALAGRVVRRFTPFSTGGEDAGGRLGRTFAA 363

Query: 421 DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD 480
           +     +      + + + A    A+ +R+L  + T+  +E L   L +HG         
Sbjct: 364 E---RAQDSVNLFEAVAAHAAALKADGKRVLFASWTEGSSERLATMLADHG--------- 411

Query: 481 IDTVERVEIIRDLRLGVFDV-LVGINLLREGLDMPEVALVAILD--ADKEGFLRSERSLI 537
           +D +  V    D++    D+ L G+  +  G     VA+++  D   D+    R +R   
Sbjct: 412 LDHIVAVRDWADVQAAPKDLYLRGVLPVEHGFVTDAVAVISETDILGDRLARPRKKRRAS 471

Query: 538 QTMGRAARNVNGKAILYAD 556
             +  A+    G  +++ D
Sbjct: 472 NFLAEASALTTGDLVVHLD 490



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)

Query: 463 LTEYLHEHGVKVRYL--HSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVA 520
           + ++L E   +V+++  H  +   +  E++     G +DVLV   ++  GLD+P    + 
Sbjct: 827 IEKFLREQVPEVKFVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLI 886

Query: 521 ILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERR 572
           +  AD  G  +    L Q  GR  R+   KA  +A   T +++      ERR
Sbjct: 887 VHRADMFGLAQ----LYQIRGRVGRS---KARAFAYLTTDAVKPMTLSAERR 931



 Score = 26.6 bits (57), Expect = 0.007
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 453 TTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGIN-LLREGL 511
           T L ++  +  TE      VKVR L   + + E  E    L+ G  +++VG + +L E +
Sbjct: 661 TLLARQHYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQV 720

Query: 512 DMPEVALVAILDADKEGFLRSER 534
              ++ LV + +    G    E+
Sbjct: 721 GFRDLGLVIVDEEQHFGVKHKEK 743