Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., transcription-repair coupling factor from Escherichia coli BL21

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 73/308 (23%), Positives = 130/308 (42%), Gaps = 45/308 (14%)

Query: 35  QTLLG-VTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPN---NAVEYFV 90
           Q LLG +TG+     +A +      P +++AP+   A +L+ E+  F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 91  SYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGD 150
             YD + P                 +  I   RLS    L   +  V++  V+ +     
Sbjct: 76  LPYDSFSP-----------------HQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118

Query: 151 PDSYLK-MMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQ 209
           P S+L    L +++G  +++  +  +L    Y   D   E G++  RG ++D+FP  S+ 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178

Query: 210 EAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQ 269
              R++ FDDEI+ + +FD +    T  ++    + P   + T +     AIE  +S+ +
Sbjct: 179 -PYRLDFFDDEIDSLRVFD-VDSQRTLEEVEAINLLPAHEFPTDK----AAIELFRSQWR 232

Query: 270 VRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDY 329
              +   D   +   Q++S+ T             +GIE    Y       EP P LF Y
Sbjct: 233 DTFEVKRDPEHIY--QQVSKGT-----------LPAGIE----YWQPLFFSEPLPPLFSY 275

Query: 330 LPHDGLLI 337
            P + LL+
Sbjct: 276 FPANTLLV 283



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 457 KRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEV 516
           ++ AE L E + E  + +   H  +   E   ++ D     F+VLV   ++  G+D+P  
Sbjct: 823 QKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 517 ALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRRE 574
             + I  AD  G  +    L Q  GR  R+ +     YA  +T   +    + ++R E
Sbjct: 881 NTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAWLLTPHPKAMTTDAQKRLE 931