Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1165 a.a., Transcription-repair-coupling factor from Alteromonas macleodii MIT1002

 Score = 79.3 bits (194), Expect = 9e-19
 Identities = 98/453 (21%), Positives = 170/453 (37%), Gaps = 60/453 (13%)

Query: 42  GSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAY 101
           GS     ++  ++  + P +++  +   A +L  E+  F  +N           + P   
Sbjct: 30  GSSAALCISQALSQYKGPIVLITADTPSAMKLEKEIAFFLSDNTK---------HTPITL 80

Query: 102 VPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYL-KMMLH 160
            P  +T      S +  I   RL       ++ + + +  V+ +     P  YL K +L 
Sbjct: 81  FPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGEGIFIVPVNTLMQRLAPTDYLAKYLLM 140

Query: 161 LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDE 220
           L +GD +++    R L +  Y          +F VRG +ID+FP  SDQ   R+++FDDE
Sbjct: 141 LNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLFPMGSDQ-PFRIDLFDDE 199

Query: 221 IECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNK 280
           I+ I  FD  T   +   +    + P   + T +E I                  L   +
Sbjct: 200 IDSIRYFDTET-QRSGEAVNEIRLLPAREFPTDKEAI-----------------TLFRQQ 241

Query: 281 LLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDE 340
            LE+   +  ++     +++    SG+E Y          E   TLFDYL    LL++  
Sbjct: 242 FLEKFDANNASESVFSQVSKGTMPSGVEYYLPLFF-----EKTATLFDYLHPKSLLLL-- 294

Query: 341 SHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATP--- 397
            H  V      F  D   +E   ++ + L      RPL       LAP  +F+       
Sbjct: 295 -HGDVQDASEFFWAD--VQERYEQYRYNLA-----RPL-------LAPDELFLPINELFG 339

Query: 398 --SEYELTKSGGEVAEQVVRPTGL----LDPIIEVRPVATQVDDLLSEARIRAANDERIL 451
              ++       +V E+    + L    LD I          + L+        N  ++L
Sbjct: 340 AIKQWPRASLSSKVLEEKSGTSNLQCEKLDDIAINSQKKVPAERLIKTVNQATDNGAKVL 399

Query: 452 VTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
               T+   E L   L + G+K + + S  D +
Sbjct: 400 FCAETQGRREGLLTVLAKAGIKPKIVDSFSDFI 432



 Score = 29.6 bits (65), Expect = 8e-04
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 33/130 (25%)

Query: 471 GVKVRYLHSDIDTVERV-----EIIRDLRLGV---------------------FDVLVGI 504
           G +V +LH+++D++ R      EI+ + R+ V                     ++VLV  
Sbjct: 827 GGQVYFLHNEVDSIARTAEEIAEIVPEARIAVGHGQMRERELEGVMSDFYHQRYNVLVCT 886

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +     YA  +T   ++
Sbjct: 887 TIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPHPKR 939

Query: 565 AIDETERRRE 574
              +  +R E
Sbjct: 940 MTKDAVKRLE 949