Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

 Score =  775 bits (2002), Expect = 0.0
 Identities = 398/666 (59%), Positives = 495/666 (74%), Gaps = 6/666 (0%)

Query: 9   SDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKT 68
           S+YQPAGDQPTAI  L+EG+ +G   Q LLGVTGSGKTFT+A VI   QRP +ILAPNKT
Sbjct: 175 SEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKT 234

Query: 69  LAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATK 128
           LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTFIEK++S+N  I++MR SAT+
Sbjct: 235 LAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 294

Query: 129 ALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAF 188
           +LLER D +IVASVS IYG+G  ++Y  M   ++ GD ++QR +L  L   QY R DM F
Sbjct: 295 SLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDF 354

Query: 189 ERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKT 248
           +RG FRVRG+ I+IFPA  +  A R+ MF DEI+ I+ FDPLTG  T  DL    IY  +
Sbjct: 355 QRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTG-DLQSVKIYANS 413

Query: 249 HYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIE 308
           HYVTPR  +  AI+ IK EL+VR   L    +LLE QR+ QRT++DIEM+   G C+GIE
Sbjct: 414 HYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIE 473

Query: 309 NYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFR 368
           NYSRYL+GR  GEPPPTLF+Y+P + LL IDESHV+V QIG M++GD  RK TL E+GFR
Sbjct: 474 NYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFR 533

Query: 369 LPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPIIEVRP 428
           LPS +DNRPL+F+E++A+ P T+ VSATP  +E+ +SGG  AEQV+RPTGL+DP +EVR 
Sbjct: 534 LPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVEVRS 593

Query: 429 VATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVE 488
             +QVDD+L E R  AA   R L T LTKRMAEDLTEYLHE GV+VRY+HSDIDT+ER+E
Sbjct: 594 ARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIE 653

Query: 489 IIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVN 548
           IIRDLRLG FDVLVGINLLREGLD+PE   VAILDADKEGFLRSE SLIQT+GRAARNV+
Sbjct: 654 IIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVD 713

Query: 549 GKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRK 608
           GK ILYAD+IT SM++A++ET RRREKQ+AYN + GITP+ +K  + DI+   D    R 
Sbjct: 714 GKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDIL---DSVYERD 770

Query: 609 QKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDEIHQL 668
              + +  ++        +  L    L+  ++ LE +M   A +L+FE AA+ RDEI +L
Sbjct: 771 HVRADISGVSGKGFADGGH--LVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRL 828

Query: 669 RQQFIA 674
           +   +A
Sbjct: 829 KAAELA 834