Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1167 a.a., Transcription-repair-coupling factor from Acinetobacter radioresistens SK82

 Score = 60.5 bits (145), Expect = 4e-13
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 24/233 (10%)

Query: 21  IKQL-LEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKA 79
           I QL L+ L+AG   + +  + GS     L  +   +++  +++A N    AQL  E++ 
Sbjct: 20  ISQLNLKQLKAG-EKRWVGSLLGSSAALLLKEIAEQSRQLLVLVAKNNQHVAQLESELEF 78

Query: 80  FFPNNAV--EYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAV 137
           +     +  ++ +  YD   P       D   E+ A ++   +Q  L  + + L ++   
Sbjct: 79  YGIKPIIFPDWEILPYDRLSPHQ-----DIVSERLAILSNMPQQGILLLSASTLAQR--- 130

Query: 138 IVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRG 197
            VA  S I G             +R G   +      RL +  Y   D  ++ G+F VRG
Sbjct: 131 -VAPTSWILG---------EHFDIRVGQKFDLEQQKLRLVQAGYLLVDTVYDHGEFAVRG 180

Query: 198 EVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHY 250
            ++DI+ A   +  +R+++FDDEI+ +  FDP T   TS +L +F + P   +
Sbjct: 181 SIMDIY-ASGQEAPIRIDLFDDEIDSLKFFDPETQRTTS-NLTQFKVLPAKEF 231



 Score = 32.7 bits (73), Expect = 1e-04
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 33/128 (25%)

Query: 471 GVKVRYLHSDIDTVERVE-----IIRDLRLGV---------------------FDVLVGI 504
           G +V +LH+++D++ER       ++ + R+ V                     ++VLV  
Sbjct: 828 GGQVYFLHNEVDSIERTAENIRALVPEARVAVAHGQMRERELEQVMQQFYHKQYNVLVCS 887

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  S++ 
Sbjct: 888 TIIETGIDVPNANTIIIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKA 940

Query: 565 AIDETERR 572
              + E+R
Sbjct: 941 LKGDAEKR 948