Pairwise Alignments

Query, 294 a.a., flagellar protein MotY from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., Outer membrane porin, OmpA family from Sphingobium sp. HT1-2

 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 31/192 (16%)

Query: 115 GYIGGQTAWSLLSELEKGRYPTF-----------------SYQDWQSRDQRIEVALSSVL 157
           G IGG     LL +L  GR+                    SY D Q R  R + A S V 
Sbjct: 39  GGIGGALGGYLLGDLVGGRHDRTEKILGAGIGAIAGAGIGSYMDEQERKLRQQTAGSGVD 98

Query: 158 FQQPYNEFSDCISKLLPYSFEDISFTILHYDQGTSVELNKASQKRLAQIAEYVRYNQDID 217
             +  ++    +   + ++F D S            +      +  + +++Y +   D  
Sbjct: 99  VIRQGDDLLLRMPSGITFAFNDAS---------VQPQFRPTLDEVSSILSQYPKTYID-- 147

Query: 218 LVLVSTYTDSTDTNNNSQNLSEQRAEVLREYFKSIGLPEDRIQVQGYGKRRPIADNASPI 277
              V  +TDS  ++  +Q LSE+RA+ +  Y  S G+   RI  +G+G+ +PIA NA+  
Sbjct: 148 ---VYGHTDSDGSDAYNQTLSERRAQSVAGYLTSHGVQSARIATRGFGETQPIASNATEE 204

Query: 278 GKDKNRRVVISL 289
           GK  NRRV I +
Sbjct: 205 GKAANRRVEIKI 216