Pairwise Alignments

Query, 294 a.a., flagellar protein MotY from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., Outer membrane protein, OmpA family from Pseudomonas putida KT2440

 Score =  114 bits (286), Expect = 2e-30
 Identities = 80/285 (28%), Positives = 150/285 (52%), Gaps = 7/285 (2%)

Query: 11  AISTLSASVASALEVRYMATPQQSTWQMATNTPLECRLVHPIPNYGDAEFSSRAGKKINL 70
           A+ TL AS+ +   + +    +   W++  +   ECRL  PI  +G   F  RAG++   
Sbjct: 11  ALLTLFASLPAGA-LTFQTRMENIAWKVEGDQ-FECRLSQPIEGFGSGTFVRRAGEQPV- 67

Query: 71  DFELKMRRPMGDTRNVSLVSMPPVWRPGEGADRITNLQFFKQFDGYIGGQ-TAWSLLSEL 129
            F+L+           SL++    W+PG G   + N++  +    +   Q  A  L++ L
Sbjct: 68  -FQLRSDSNALGAGTASLLAAAAPWQPGRGDINLGNVRMARSGVLFSSSQGQASRLINGL 126

Query: 130 EKGRYPTFSYQDWQSRDQRIEVALSSVLFQQPYNEFSDCISKLLPYSFEDISFTILHYDQ 189
             GR         ++  + +EV +  V F + YN++  C  KLLP +++ +  T + +  
Sbjct: 127 LDGRSTVVRNYTGEA-GRPMEVRVLPVSFAKAYNDYQVCAGKLLPMNYDQVRQTQVGFPG 185

Query: 190 GTSVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQNLSEQRAEVLREYF 249
           G  +EL+ A++ RL  I +Y++ +  ++ V ++ ++D++     +++LS +RA  + +YF
Sbjct: 186 G-GIELDAAAKARLDVILDYMKADPTVNHVELNGHSDNSGNRLTNRDLSRRRALAVADYF 244

Query: 250 KSIGLPEDRIQVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQV 294
           K+ G+PE++I V+ +G+R P+A N S   + +NRRV I L R  V
Sbjct: 245 KANGVPEEQITVRFHGERYPLAKNNSASNRARNRRVNIELDRVAV 289