Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., tRNA pseudouridine synthase A from Xanthobacter sp. DMC5

 Score =  176 bits (446), Expect = 4e-49
 Identities = 103/243 (42%), Positives = 132/243 (54%), Gaps = 1/243 (0%)

Query: 2   RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
           R  L IEYDGT + GWQ Q ++ +VQ  L +A  +     V V  AGRTDAGVH TGQV 
Sbjct: 3   RYKLTIEYDGTPFAGWQMQADLPTVQGVLAEAFQRFCGEKVTVAGAGRTDAGVHATGQVA 62

Query: 62  HFDTTAERQMVAWTMGANANL-PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
           H D   E +         A L P  +AV  A  VPD F ARFSAT R Y Y I N     
Sbjct: 63  HVDLAKEWRTDTVRDAMTAQLRPHPVAVLSAERVPDSFDARFSATKRHYLYRIVNRRPDL 122

Query: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGRY 180
            +          +LD E M  A Q LLG++DF++FRA  CQ+ SP + +  L+V+RHG  
Sbjct: 123 ALDRDRAWRIPQKLDAEAMHAAAQRLLGKHDFSTFRAAECQAASPVKTLDQLDVSRHGDE 182

Query: 181 VVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLVS 240
           + +   A +F+HH VR++ GSL+ VG G    + +   LA  DRT     A A GLYL +
Sbjct: 183 IRVVTSARSFLHHQVRSMVGSLMRVGEGRWSADDLAAALAAADRTRCGPMAPAAGLYLAA 242

Query: 241 VDY 243
           V Y
Sbjct: 243 VSY 245