Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  301 bits (772), Expect = 7e-87
 Identities = 149/259 (57%), Positives = 182/259 (70%), Gaps = 1/259 (0%)

Query: 2   RIALGIEYDGTHYYGWQRQRE-VKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60
           RIALG+EY G+ Y GWQRQ   V +VQE LE ALSK+A+ PV + CAGRTDAGVH  GQV
Sbjct: 8   RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 67

Query: 61  VHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
           VHFDT AER M AW MGAN NLP D++V WA  +P  FHARF A ARRYRYVIYN   RP
Sbjct: 68  VHFDTQAERSMKAWVMGANINLPHDVSVTWAKVMPAHFHARFKAIARRYRYVIYNDQIRP 127

Query: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGRY 180
             LN  ++  H  LD E+M +A Q+L+G +DF++FRA  CQ++SP + V HL VTRHG+ 
Sbjct: 128 AHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHGKM 187

Query: 181 VVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLVS 240
           +V+DI+A AF+HHMVRNI G L+ +G GE+  EW + +L  + R     TA   GLYLV 
Sbjct: 188 IVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVEWAKEVLESRVRRTGGVTAHPFGLYLVD 247

Query: 241 VDYPAHFGLPEMPIGPLFL 259
           V+Y   F LPE  IGP FL
Sbjct: 248 VEYRDEFELPERFIGPHFL 266