Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) from Sphingobium sp. HT1-2

 Score =  162 bits (409), Expect = 8e-45
 Identities = 93/244 (38%), Positives = 130/244 (53%), Gaps = 3/244 (1%)

Query: 2   RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
           R A  +E+DG  + GWQRQ    SVQ+A+E A++ +      +  AGRTDAGVHG     
Sbjct: 3   RFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAINAVTGERAILHAAGRTDAGVHGLAMRA 62

Query: 62  HFDTTAERQMVAWTMGANANL-PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
           H D              NA L P  +A+     V  ++HARFS T R Y Y I N    P
Sbjct: 63  HADVEKPLTPFRLMEAINAKLRPHPVAILACEEVAPDWHARFSCTGRAYIYRIANR-RAP 121

Query: 121 GILNSGVS-HYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGR 179
             L SG++      LD + M  A Q L+G +DFT+FR++HCQ+ SP +++  L+V R G 
Sbjct: 122 LTLESGLAWRVIQPLDADAMHDAAQILVGHHDFTTFRSIHCQAASPLKSLAMLDVERQGD 181

Query: 180 YVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLV 239
            + I  +A +F+HH VR++ G L  VG G    + ++  L  +DR   A  A  +GLY V
Sbjct: 182 RIAIRAEARSFLHHQVRSMVGCLAMVGMGRWSADDLRDALEARDRARLALNAPPDGLYFV 241

Query: 240 SVDY 243
             DY
Sbjct: 242 RADY 245