Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., tRNA pseudouridine (38-40)synthase from Pseudomonas putida KT2440

 Score =  305 bits (780), Expect = 9e-88
 Identities = 150/259 (57%), Positives = 186/259 (71%), Gaps = 1/259 (0%)

Query: 2   RIALGIEYDGTHYYGWQRQRE-VKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60
           RIALG+EY G  Y GWQRQ   V SVQ+ALE+ALSK+AN P+ V CAGRTDAGVHG GQV
Sbjct: 20  RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 79

Query: 61  VHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
           VHFDT A R   AWTMG N NLP DI+V W+  +P +FHARF A ARRYRYVIYN   RP
Sbjct: 80  VHFDTRAVRDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRP 139

Query: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGRY 180
             L   V+  H  LDV++M +A QYLLG +DF++FRA  CQ++SP +++ HL VTRHG+ 
Sbjct: 140 AHLAEEVTWNHRPLDVDRMAEAAQYLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHGQM 199

Query: 181 VVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLVS 240
           +V+D++A AF+HHMVRNI G L+A+G GE+   W + +L  ++R     TA   GLYLV 
Sbjct: 200 IVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQ 259

Query: 241 VDYPAHFGLPEMPIGPLFL 259
           V+YP  F LP+  IGP FL
Sbjct: 260 VEYPEAFALPKRYIGPHFL 278