Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., tRNA pseudouridine synthase A from Pseudomonas sp. DMC3

 Score =  309 bits (792), Expect = 4e-89
 Identities = 150/259 (57%), Positives = 186/259 (71%), Gaps = 1/259 (0%)

Query: 2   RIALGIEYDGTHYYGWQRQRE-VKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60
           R+ALG+EY G+ Y GWQRQ   V +VQE LEKALSK+AN PV +QCAGRTDAGVH  GQV
Sbjct: 18  RVALGVEYKGSRYSGWQRQLTGVATVQEELEKALSKVANSPVSLQCAGRTDAGVHACGQV 77

Query: 61  VHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
           VHFDT  +R + AW MGAN NLP DI+V WA  +P  FHARF A ARRYRYVIYN   RP
Sbjct: 78  VHFDTQVDRSLKAWVMGANINLPHDISVSWARVMPAHFHARFKAIARRYRYVIYNDQIRP 137

Query: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGRY 180
             LN  ++  H  LD E+M +A QYL+G +DF++FRA  CQ++SP + + HL VTRHG+ 
Sbjct: 138 AHLNEEITWNHRPLDAERMAEAAQYLIGTHDFSAFRAGQCQAKSPIKKMHHLRVTRHGKM 197

Query: 181 VVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLVS 240
           +V+DI+ANAF+HHMVRNI G L+ +G GE+  EW++ +L  ++R     TA   GLYLV 
Sbjct: 198 IVLDIRANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPYGLYLVQ 257

Query: 241 VDYPAHFGLPEMPIGPLFL 259
           V+Y   F LPE  IGP FL
Sbjct: 258 VEYHDEFPLPERFIGPHFL 276