Pairwise Alignments
Query, 1621 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 911 a.a., putative motility protein fimV from Pseudomonas putida KT2440
Score = 86.3 bits (212), Expect = 1e-20
Identities = 176/732 (24%), Positives = 293/732 (40%), Gaps = 128/732 (17%)
Query: 982 QLEPVAESEVEPELDLASEPAEEEAFTELNKLDLPEYTEEDALADAQLESATESEVESE- 1040
Q++ +A+ E E+ AE+ A + P + DA E+A + +
Sbjct: 211 QIQSIAQGEANREV------AEQYAAWREGRRLGPRARQLDATRRGAAEAAPSRIAQGDN 264
Query: 1041 LELVS---EPAAEEAFTELDELDLPEYTEEDALADSQLEPAAESEVEPELELVSEPVT-- 1095
L LVS + A +A DEL + + + + + D++ + ++++ +L+ + +
Sbjct: 265 LRLVSPGNQAGAGQAKALNDELAMAQESLDTSRRDNEELKSRMADLQSQLDKLQRLIELK 324
Query: 1096 ---------EEAFTELDELDLPEY---TEEDALADAQLEPAVESEVEPELELASEPAEEE 1143
+ A D PE A AD +P +++ P AS+P
Sbjct: 325 NNQLARLEGQGAAASAAAADTPEQPVVNPAPAAADTAPQPVPDTQPAP----ASQPKGAL 380
Query: 1144 ASTELNELDLPEYTEEDALADAQL------EPAAESEVESELELASDLEEEE------PF 1191
S N L L A L + A+ E E L +A LEEE+
Sbjct: 381 DSVLGNPWLLGVIAGSSILVLALLLWLLARKRKAQQEAEKHLRMARALEEEQGAGFDSDI 440
Query: 1192 TELNELDLPE--YTEEDALADAQLEPAVESE--VEPELELATEPAEEEAFPELDELDLPE 1247
++ PE T A+ A AV +E EP E A EP E +A P L
Sbjct: 441 ESFGGVEAPEPGVTLSPAVVAASAAAAVAAEKVAEPVAEAAPEP-EPQADPHAALLA--- 496
Query: 1248 YTEEDALADAQLEPAAEAEVEPELELASDLEEKETFTELDELDL-PEYTEEDALADAQLE 1306
+ LA+ +L A E +EP + A + ++ L +D+ ++ A A+ + +
Sbjct: 497 -QVDQCLAEGRLNRATEL-LEPAVAAAPERDD----LRLKLMDVYARQGDQSAFAEQERQ 550
Query: 1307 -PAAESEVEPELELASVLEEEDSF--------------TELDELDLPE--YTEKDALADA 1349
PA+E V E+A + E + E+DE + E + E A A
Sbjct: 551 LPASEQNVA---EVAGLKERYPAMLGLAAAGLGAAALAAEMDEQYVQELLHDEPKAPVVA 607
Query: 1350 QLEPAAESEVEPELGDETETLAQ---ETESDAL----------VADEDLLASVESAVDEV 1396
+ P S EP+ E E +AQ + E DA +A++DL ++ + ++ E
Sbjct: 608 DVVPDELSGFEPQEQAEPEVVAQAAPDAELDAFDDVPTLDATDLAEQDLDSAFDLSLGED 667
Query: 1397 ---QPELLGATQDVPPTQS-------LANKAFDEEALHDWLSDNPDGEKPFSFDRPLDAK 1446
Q L + D P Q +A DE + + E+PF+ D L A
Sbjct: 668 LADQDPLAASVLDEPMAQGGVPDELIIAEPVLDEPVQEEAQPE----EQPFAVDAELQA- 722
Query: 1447 TIDSAGMDIDAMLQMG----GEDWNGFHL---------TPDQQAQLPDDVPEDEQAIWAS 1493
A D +AML D + F L P+ Q P DV + A +
Sbjct: 723 ---DADADFEAMLAQAEPQPAVDLSDFDLDVSEPVAPAAPEALEQDPLDVTAELAAFDSE 779
Query: 1494 ETPEPQAK---PENWGSQEDLLDFDPQRDGYMT-IDELMAQVESEEQGLNPDEEELKL-- 1547
+P ++ P ++ L D P + + ++++ A+++ Q L E
Sbjct: 780 PEFDPVSEFDLPSDFDLSLSLEDDSPAAKSFASELNDVNAELDKLSQSLETPSLEPHFTS 839
Query: 1548 -DVGLDEFPDVIGDIRDIDVDSGA-EAAGKLDLAKIYIEMNDEKGAIKLLEEAIVDGDDE 1605
D P+ + D+ D D SG+ E A KLDLA+ YI+M D +GA +L+E + DGDD
Sbjct: 840 EDAVAQPEPEPLDDL-DFDFFSGSDEVATKLDLARAYIDMGDSQGARDILDEVVKDGDDS 898
Query: 1606 IRQQAKRLIDVL 1617
RQ+A+ ++ L
Sbjct: 899 QRQEAEDMLSRL 910
Score = 73.2 bits (178), Expect = 1e-16
Identities = 183/801 (22%), Positives = 299/801 (37%), Gaps = 113/801 (14%)
Query: 84 TSANQTLWSIASQLRPSSSVTVQQTLLAIYQLNPQAFENQNIHTLIPGSTLRVPSLAQIS 143
T TLW IA+ R + ++QQT++AI LNP AF NI+ L G LR+P QI
Sbjct: 156 TQRRDTLWQIAA--RNTQGGSIQQTMIAIQALNPDAFIGNNINQLKVGQVLRLPDQQQIQ 213
Query: 144 RNSTQDAVNIMASHQAKLNQTPDTPVRP---VAPPRPAPVATPKVEAVAQTPPQVTP--- 197
+ +A +A A + R A R A A P A V+P
Sbjct: 214 SIAQGEANREVAEQYAAWREGRRLGPRARQLDATRRGAAEAAPSRIAQGDNLRLVSPGNQ 273
Query: 198 TTAPQEKAPTELKTPAKPSQSTDAEVMALEEKNHTLRLMLSQVQSEVSTLKE--ELGDEN 255
A Q KA + A+ S T N L+ ++ +QS++ L+ EL +
Sbjct: 274 AGAGQAKALNDELAMAQESLDTS------RRDNEELKSRMADLQSQLDKLQRLIELKNNQ 327
Query: 256 RIRSE--------------VERLLEEERRKAEEASRLAP-----------SALDNLLSNG 290
R E + ++ A+ A + P ALD++L N
Sbjct: 328 LARLEGQGAAASAAAADTPEQPVVNPAPAAADTAPQPVPDTQPAPASQPKGALDSVLGNP 387
Query: 291 WLVALLALIPGLLIAIVVLLLLNRRSSAQQENPTQNNITSEMPTAAPVTLGPEQTEDIGD 350
WL+ ++A +L+ ++L LL R+ AQQE +E L EQ
Sbjct: 388 WLLGVIA-GSSILVLALLLWLLARKRKAQQE--------AEKHLRMARALEEEQGAGFDS 438
Query: 351 DLLLDDDLFSTTDDKEENDAEKAFSDEDDVFAD-----LNETDLDFNLDGQDSDDLFVGI 405
D+ + + + A A S V A+ + E + L +
Sbjct: 439 DIESFGGVEAPEPGVTLSPAVVAASAAAAVAAEKVAEPVAEAAPEPEPQADPHAALLAQV 498
Query: 406 DD---DGDLDTEFDALNESANGISVNADDKALGLEEMERALNDVSEPTDNDDLNSFDLAD 462
D +G L+ + L E A + DD L L ++ D S +F +
Sbjct: 499 DQCLAEGRLNRATELL-EPAVAAAPERDDLRLKLMDVYARQGDQS---------AFAEQE 548
Query: 463 ENQMSEDDIEALLSGDEENELLSDGKVDQSLLDDLLASELD------ALDDEPAIQDTET 516
+ + A ++G +E G L LA+E+D L DEP
Sbjct: 549 RQLPASEQNVAEVAGLKERYPAMLGLAAAGLGAAALAAEMDEQYVQELLHDEP---KAPV 605
Query: 517 LDTLLNDELASLSEEDDDEFDLSGAGVAGDQDLDDLFASIEEQADLEQLEAKAIDETALL 576
+ ++ DEL+ ++ E ++ A A D +LD + ++ L+ + D +
Sbjct: 606 VADVVPDELSGFEPQEQAEPEVV-AQAAPDAELD----AFDDVPTLDATDLAEQDLDSAF 660
Query: 577 DEILAEQDAPLSEESTELLDELLDDFDKPENDEFDAQTADLLQPEEPILDLEEDSTQLLN 636
D L E A + +LDE + P D L EP+LD E +
Sbjct: 661 DLSLGEDLADQDPLAASVLDEPMAQGGVP----------DELIIAEPVLD-EPVQEEAQP 709
Query: 637 EVLGEPVPEELASGLEIDQNSTELLDELLDDLDLDDESIEATE--FSVAPEKLSVEDGTE 694
E V EL + + D + E +DL D ++ +E APE L +D +
Sbjct: 710 EEQPFAVDAELQADADADFEAMLAQAEPQPAVDLSDFDLDVSEPVAPAAPEALE-QDPLD 768
Query: 695 LFDELLEIEQHPESAESLPELATEDEFNSDTFIDDLLNSAPAKDPLLEPVLDENEAFAQA 754
+ EL + PE + + E +F+ ++D +PA + D N +
Sbjct: 769 VTAELAAFDSEPE-FDPVSEFDLPSDFDLSLSLED---DSPAAKSFASELNDVNAELDKL 824
Query: 755 DDFDFNPEIEGGL--EDDLSQPSALPANEFGTPQDEDWVFDEDDSSPTLEGNAELELSSA 812
P +E ED ++QP P ++ D D S + E +L+L+ A
Sbjct: 825 SQSLETPSLEPHFTSEDAVAQPEPEPLDD----------LDFDFFSGSDEVATKLDLARA 874
Query: 813 EDDLPEQTTATNETADELLAD 833
D+ + A + DE++ D
Sbjct: 875 YIDMGDSQGA-RDILDEVVKD 894
Score = 50.8 bits (120), Expect = 7e-10
Identities = 71/273 (26%), Positives = 106/273 (38%), Gaps = 39/273 (14%)
Query: 761 PEIEGGLEDDLS--QPSALPANEFGTPQDEDWVFDEDDSSPTLEGN--AELELSSAED-- 814
P + + D+LS +P E D D D PTL+ AE +L SA D
Sbjct: 604 PVVADVVPDELSGFEPQEQAEPEVVAQAAPDAELDAFDDVPTLDATDLAEQDLDSAFDLS 663
Query: 815 ---DLPEQTTATNETADELLADLAAQPQSNTVDTSDDALAPDGLSQSVEEPLTLNDLELP 871
DL +Q DE +A + + D + +Q E+P + D EL
Sbjct: 664 LGEDLADQDPLAASVLDEPMAQGGVPDELIIAEPVLDEPVQEE-AQPEEQPFAV-DAELQ 721
Query: 872 EEND---EPQLAEVTPSSAFDEQQVETEIEPESEPLAAEA-SNDESDLTAL-----NELD 922
+ D E LA+ P A D + ++ P A EA D D+TA +E +
Sbjct: 722 ADADADFEAMLAQAEPQPAVDLSDFDLDVSEPVAPAAPEALEQDPLDVTAELAAFDSEPE 781
Query: 923 LPEYTEEDVLADVQLEPAAESEVEPDLELVNEPVTEEAFTELDELDL--------PEYTE 974
+E D+ +D L + E + +E + ELD+L P +T
Sbjct: 782 FDPVSEFDLPSDFDLSLSLEDDSPAAKSFASE--LNDVNAELDKLSQSLETPSLEPHFTS 839
Query: 975 EDALADAQLEPV---------AESEVEPELDLA 998
EDA+A + EP+ EV +LDLA
Sbjct: 840 EDAVAQPEPEPLDDLDFDFFSGSDEVATKLDLA 872
Score = 46.6 bits (109), Expect = 1e-08
Identities = 83/331 (25%), Positives = 134/331 (40%), Gaps = 66/331 (19%)
Query: 526 ASLSEEDDDEF------DLSGAGVAGDQDLDDLFASIEEQADLEQLEAKAIDETALLDEI 579
A+L+ E D+++ D A V D D+L + E Q EQ E + + + A E+
Sbjct: 582 AALAAEMDEQYVQELLHDEPKAPVVADVVPDEL-SGFEPQ---EQAEPEVVAQAAPDAEL 637
Query: 580 LAEQDAPLSEESTELLDELLDDFDKPENDEFDAQTADLLQPEEPILDLEEDSTQLLNEVL 639
A D P + ++T+L ++ LD FD + L ++P+ + +L+E +
Sbjct: 638 DAFDDVP-TLDATDLAEQDLDS-------AFDLSLGEDLADQDPL------AASVLDEPM 683
Query: 640 GEP-VPEELASGLEIDQNSTELLDELLDDLDLDDESIEATEFSVAPEKLSVEDGTELFDE 698
+ VP+EL + + +LD+ ++ E F+V E + D F+
Sbjct: 684 AQGGVPDELI-----------IAEPVLDEPVQEEAQPEEQPFAVDAELQADADAD--FEA 730
Query: 699 LLEIEQHPESAESLPELATEDEFNSDTFIDDLLNSAPAKDPLLEPVLDENEAFAQADDFD 758
+L + P+ A L SD +D APA LE D + A+ FD
Sbjct: 731 MLA-QAEPQPAVDL----------SDFDLDVSEPVAPAAPEALEQ--DPLDVTAELAAFD 777
Query: 759 FNPEIEGGLEDDLSQPSALPANEFGTPQDEDWVFDEDDSSPTLEGNA-ELELSSAEDDLP 817
PE + P +EF P D D +D SP + A EL +AE D
Sbjct: 778 SEPEFD-------------PVSEFDLPSDFDLSLSLEDDSPAAKSFASELNDVNAELDKL 824
Query: 818 EQTTATNETADELLA-DLAAQPQSNTVDTSD 847
Q+ T + D AQP+ +D D
Sbjct: 825 SQSLETPSLEPHFTSEDAVAQPEPEPLDDLD 855