Pairwise Alignments

Query, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., PTS N-acetyl-D-glucosamine transporter from Pseudomonas simiae WCS417

 Score =  430 bits (1105), Expect = e-125
 Identities = 234/507 (46%), Positives = 305/507 (60%), Gaps = 56/507 (11%)

Query: 8   QKLGKALMLPIATLPVAALLLRLGQPDLLGIPFMAAAGDAIFSQLPLLFGLGIAIGLSKD 67
           Q+LG+ALMLPIA LP+A LLLRLG  DLL I  M  AG AIF+ L L+F +GIA+G ++D
Sbjct: 10  QRLGRALMLPIAILPIAGLLLRLGDTDLLNIAVMHDAGQAIFANLALIFAIGIAVGFARD 69

Query: 68  GSGAAGLAGAVAYFVLSATAKTIDASINMSFFGGIFAGIIAGHSYNAFHTTRLPEWLAFF 127
            +G AGLAGA+ Y V+ +T K +D SINM    GI +G++AG  YN F   +LPE+LAFF
Sbjct: 70  NNGTAGLAGAIGYLVMVSTLKVMDTSINMGMLAGIASGLMAGGLYNRFKDIKLPEYLAFF 129

Query: 128 AGKRLVPIMAGLFALVAGALSGVIWPSIQGGLDALAHAVSTSGALGQFVYGTLNRALIPV 187
            G+R VPI+ G  A+  G + G+IWP IQ G+++    +  SG+LG FV+G  NR LI  
Sbjct: 130 GGRRFVPIVTGFSAVGLGVIFGLIWPPIQHGINSFGVLLMESGSLGAFVFGVFNRLLIVT 189

Query: 188 GLHHVLNSYFWFGMGTCQEILVSGAQAAGQALPALEKLCVDPALAKTLVVGQEHTFAFKN 247
           GLHH+LN+  WF  G+                        DP                  
Sbjct: 190 GLHHILNNMAWFVFGSF----------------------TDP------------------ 209

Query: 248 AVTPEITAVVKEVTEVVKSGDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPA 307
                       VT  V +GDL R+F GD   G FM G FPVM+FGLP A LAMY  A  
Sbjct: 210 ------------VTGAVVTGDLTRYFAGDPKGGQFMTGMFPVMLFGLPAACLAMYRNALP 257

Query: 308 ERRHQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAMHAVFTGLSLVVANMFGTLHG 367
           ERR  +GG   S+A  SFLTG+TEP+EF F+FLAP LY +HAV TGLS+ V NM     G
Sbjct: 258 ERRKVMGGIFLSMALTSFLTGVTEPIEFAFMFLAPFLYLIHAVLTGLSMAVTNMLNIHLG 317

Query: 368 FGFSAGLIDFLLNWGLATKPATLFVIGLAFFALYFFTFTFAIRAFNLKSPGREDEEVETE 427
           F FS G ID +L WG +T    +F +GLA+  +Y+  F + IR FNLK+PGRED +V   
Sbjct: 318 FTFSGGFIDMVLGWGKSTNGWLVFPVGLAYALIYYSVFNYCIRHFNLKTPGREDTQVVQA 377

Query: 428 TDSADASKGDLARQYLKALGGHENLTSIDACITRLRLTLKDRSVADEAVLKKLGAKGVVK 487
              +D  +   A  Y++ALGG +NL S+ AC TRLRL + DR+ A +A LK LGA  VV+
Sbjct: 378 EAMSDNQR---ATAYIQALGGAQNLLSVGACTTRLRLDMVDRNKAVDAELKALGAMAVVR 434

Query: 488 LGE-NNLQVILGPLAEIVAGEMKAISP 513
            G   +LQV++GP+A+ +A E++   P
Sbjct: 435 PGNGGSLQVVVGPMADSIADEIRLAMP 461