Pairwise Alignments

Query, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., PTS N-acetyl glucosamine transporter subunit IIABC from Escherichia coli ECRC100

 Score =  461 bits (1185), Expect = e-134
 Identities = 248/518 (47%), Positives = 321/518 (61%), Gaps = 60/518 (11%)

Query: 1   MNILGYAQKLGKALMLPIATLPVAALLLRLGQPDLLGIPFMAAAGDAIFSQLPLLFGLGI 60
           MNILG+ Q+LG+AL LPIA LPVAALLLR GQPDLL + F+A AG AIF  L L+F +G+
Sbjct: 1   MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAGGAIFDNLALIFAIGV 60

Query: 61  AIGLSKDGSGAAGLAGAVAYFVLSATAKTIDASINMSFFGGIFAGIIAGHSYNAFHTTRL 120
           A   SKD +GAA LAGAV YFVL+    TI+  INM    GI  G++ G +YN +   +L
Sbjct: 61  ASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKL 120

Query: 121 PEWLAFFAGKRLVPIMAGLFALVAGALSGVIWPSIQGGLDALAHAVSTSGALGQFVYGTL 180
           P++L+FF GKR VPI  G F LV  A+ G +WP +Q  + A    + ++GALG  ++G +
Sbjct: 121 PDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFI 180

Query: 181 NRALIPVGLHHVLNSYFWFGMGTCQEILVSGAQAAGQALPALEKLCVDPALAKTLVVGQE 240
           NR LIP GLH VLN+  WF +G                                      
Sbjct: 181 NRLLIPTGLHQVLNTIAWFQIGE------------------------------------- 203

Query: 241 HTFAFKNAVTPEITAVVKEVTEVVKSGDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALA 300
               F NA               V  GD++RF+ GD +AG+FM+GFFP+MMFGLPGAALA
Sbjct: 204 ----FTNAAG------------TVFHGDINRFYAGDGTAGMFMSGFFPIMMFGLPGAALA 247

Query: 301 MYLAAPAERRHQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAMHAVFTGLSLVVAN 360
           MY AAP ERR  VGG L SVA  +FLTG+TEPLEF+F+FLAP LY +HA+ TG+SL VA 
Sbjct: 248 MYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVAT 307

Query: 361 MFGTLHGFGFSAGLIDFLLNWGLATKPAT---LFVIGLAFFALYFFTFTFAIRAFNLKSP 417
           + G   GF FSAG ID+ L + L         L V+G+ FFA+YF  F+  IR FNLK+P
Sbjct: 308 LLGIHAGFSFSAGAIDYALMYNLPAASQNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTP 367

Query: 418 GREDEEVETETDSADASK----GDLARQYLKALGGHENLTSIDACITRLRLTLKDRSVAD 473
           GRED+E E  T+ A+++       LA  Y+ A+GG +NL +IDACITRLRLT+ D +  +
Sbjct: 368 GREDKEDEIVTEEANSNTEEGLNQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVN 427

Query: 474 EAVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEMKAI 511
           + + K+LGA GVVKL +  +QVI+G  AE +   MK +
Sbjct: 428 DTMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKV 465