Pairwise Alignments

Query, 404 a.a., N-acetylglucosamine repressor from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., DNA-binding transcriptional repressor (NCBI) from Escherichia coli BW25113

 Score =  300 bits (767), Expect = 7e-86
 Identities = 158/401 (39%), Positives = 244/401 (60%), Gaps = 3/401 (0%)

Query: 5   QIGNVDLVKQLNSAAVYRLIDQQGPISRIQVADVSQLAPASVTKITRQLLERGLIKEVA- 63
           Q G++D +KQ N+ AVYRLIDQ GP+SRI ++ ++QLAPAS+TKI R++LE  L++E+  
Sbjct: 6   QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65

Query: 64  QQASTGGRRAISLTTEVKPFHSIAVRIGRDYIQLSLYDLGGNSLVDEHHEFHYNTQDVLM 123
           ++A   GR A+ L  E + +H +++RI R  I L+L DL    +V+E  E        L+
Sbjct: 66  KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125

Query: 124 SSLIKQIKQFIQQHTALIDQLIAIGVALPGLVNPETGVVEYMPNVA-INELPLGATIRDE 182
             +I  I QF  +H   +++L +I + LPG+++ E G+V  MP    + E+PLG  +   
Sbjct: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185

Query: 183 FHVECFVGNDVRGIALAEHYFGASQDCQDSILVSVHRGTGAGIIVNGQVFLGYNRNVGEI 242
             V  ++ +D+    +AE  FGAS+  +D I V +    GAG+I +G +    + ++ EI
Sbjct: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245

Query: 243 GHIQIDPLGEQCQCGNFGCLETVATNPAITSRVQKLIAQGYESSLSTLDTITIDDVCEHA 302
           GH Q+DP G++C CGN GCLET+A+  +I    Q  + Q   S L     +T+D +C+ A
Sbjct: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDSLCQAA 304

Query: 303 NAGDELAKQALVRVGNQLGKAIAITVNLFNPQKIVIAGQITAAKEIVFPAIQRNVENQSL 362
             GD LAK  +  VG  +G+ +AI VNLFNPQKI+I   ++ A +I+FP I  ++  Q+L
Sbjct: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364

Query: 363 KTFHQHLPIVSSQVYKQPTMGAFAMIKRAMLNGVLLQKLLE 403
             + QH+ + S+Q   Q TM   A++K AM NG LL +LL+
Sbjct: 365 PAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405