Pairwise Alignments

Query, 528 a.a., cation:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., putative Sodium/proton antiporter from Pseudomonas putida KT2440

 Score = 88.2 bits (217), Expect = 8e-22
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 49/374 (13%)

Query: 11  LAGFIALKCHL---PPLVGFLIAGFALNAYG-----FTSNDTLSLLADLGVTLLLFTIGL 62
           +AG + +  H    P ++G+++AGF +  +          DT+  LA+LGV  L+F +GL
Sbjct: 16  VAGVVTILFHRFKQPVVLGYIVAGFIIGPHTPPFGLIHDEDTIKTLAELGVIFLMFCLGL 75

Query: 63  KLEVKTLLAKEIWAGSTIHNLLSTALFTLLLLIFKQLGLDSLADLSFDKLILIGFALSFS 122
           +  ++ L       G+T       A   ++L+I+    +      S    + +G  L+ S
Sbjct: 76  EFSLRKLFK----VGATA---FIAAFLEIVLMIWIGFEIGRWFGWSTMDSLFLGAILAIS 128

Query: 123 STVFAVKSLQEKGEMNATYGTLAIGILVMQDIFAVVFLT-----------------ASTG 165
           ST   VK+L +    N  +  L  G+L+++DI  +  +                  ++ G
Sbjct: 129 STTIIVKALNDLKMKNERFAQLIFGVLIVEDILGIGIIALLSGIAVSGTVSSGEVFSTVG 188

Query: 166 KLPEWYAIGLFVLPLLRPLFYELLDWVGHGEMLVL------FGIFFALVVGAGSFQLVGM 219
           KL  +  + L +  LL P     +      EML++      FG  F L+V    + +V  
Sbjct: 189 KLSLFMVVALVIGILLVPRLLAYVARFESNEMLLITVLGLCFG--FCLLVVKLEYSMV-- 244

Query: 220 KPDLGALILGMMLASHHKASELSKALFNLKELFLVCFFLNIGLSAHP-TTTGIMLALLLL 278
              LGA ++G ++A   +  ++ + +  +++LF   FF+ IG+   P         ++++
Sbjct: 245 ---LGAFLIGAIMAESRQLLKIERLIEPVRDLFSAIFFVAIGMMIDPEVLIDYAWPIVVI 301

Query: 279 LLLPIKGVLYFWVIHQF--HFRVRTSLLASLSLFNFSEFGLIVGGLAFKMGWINSDILVA 336
            L  + G +    +  F      RTSL   + L    EF  I+  L   +  + SD L  
Sbjct: 302 TLAVVLGKMLSCGMGAFIAGNDGRTSLRVGMGLSQIGEFSFIIAALGMTL-QVTSDFLYP 360

Query: 337 LAVSVPLSFILAAP 350
           +AV+V     L  P
Sbjct: 361 VAVAVSAITTLLTP 374



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 253 LVCFFLNIGLSAHPTTTGIMLALLLLLLLPIKGVLYFWVIHQFHFRVRTSLLASL 307
           LV F L   LSA    T  +L ++ ++   +  +L+ W+I + H R++ +LL +L
Sbjct: 525 LVIFLLLSALSASILPTSELLLVIAVVAAVVVALLWRWLI-RVHTRMQIALLETL 578