Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., antitermination protein NusG from Pseudomonas simiae WCS417

 Score = 40.8 bits (94), Expect = 1e-08
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 17/171 (9%)

Query: 2   KRWYLLYCKRGEQ--------QRAKMH-LENQSVECFYPEVCVEKILRGKRQMVQEPLFP 52
           KRWY+++   G +        +R K+  +E+   E   P   V ++  G+++  +   FP
Sbjct: 3   KRWYVVHAYSGYEKHVMRSLLERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFP 62

Query: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFV---RLGPHP-RELQGDLIYQLKQLDCEQLKHA 108
            Y+ V+ D   G ++  V+ T  V+ F+      P P  + + + I  L+++     K  
Sbjct: 63  GYVLVQMDMNEG-TWHLVKDTPRVMGFIGGTADKPAPITDKEAEAI--LRRVADGSDKPK 119

Query: 109 TKQLPEKGQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMI-SQQVPMSIE 158
            K L E G+ VRV  G FA       E + +   I +  +I  +  P+ +E
Sbjct: 120 PKTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELE 170