Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 172 a.a., Transcription antitermination protein RfaH from Pseudomonas sp. DMC3

 Score = 99.0 bits (245), Expect = 4e-26
 Identities = 48/154 (31%), Positives = 88/154 (57%), Gaps = 2/154 (1%)

Query: 4   WYLLYCKRGEQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPSYMFVRFDFEN 63
           WYLL CK  + +RA+++L+ Q+   F P++  E+ +RGKRQ   E LFP Y+F+  +   
Sbjct: 11  WYLLQCKPRQDERAQLNLQQQNYSTFRPQLMSERSIRGKRQRTLESLFPGYVFI--ELSR 68

Query: 64  GPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQLKQLDCEQLKHATKQLPEKGQTVRVAR 123
             ++  +RSTRGV   V     P  +  D+I QL++   E L    +   + G+ +++ +
Sbjct: 69  DDNWAPIRSTRGVSRIVEFNHVPARVDEDVIAQLRERSQESLGFPAEPTLKPGEPLQIVQ 128

Query: 124 GQFAGIEAIYLEPDGDTRSIMLVKMISQQVPMSI 157
           G  + +E ++L   GD R ++L+  +++Q  +S+
Sbjct: 129 GPLSPLEGVFLSMQGDERVMILLNFLNRQQHVSV 162