Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 181 a.a., transcription antitermination protein NusG (NCBI) from Escherichia coli BW25113

 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 19/172 (11%)

Query: 2   KRWYLLYCKRGEQQRA----KMHLENQSVECFYPEVCVE-----KILRGKRQMVQEPLFP 52
           KRWY++    G + R     + H++  ++E  + EV V      +I  G+R+  +   FP
Sbjct: 7   KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66

Query: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFV-----RLGPHPRELQGDLIYQLKQLDCEQLKH 107
            Y+ V+    N  S+  VRS   V+ F+     R  P   +    ++ +L+Q+     K 
Sbjct: 67  GYVLVQMVM-NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD---KP 122

Query: 108 ATKQLPEKGQTVRVARGQFAGIEAIYLEPDGD-TRSIMLVKMISQQVPMSIE 158
             K L E G+ VRV  G FA    +  E D + +R  + V +  +  P+ ++
Sbjct: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174