Pairwise Alignments

Query, 294 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., Type III secretion transcriptional activator HilA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 10/110 (9%)

Query: 13  MSHIGTKFILAEKFTFDP----LSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISR 68
           M H     +  +KF FD     +  +L+    SE+ + +   E  +L +L +   E++S+
Sbjct: 1   MPHFNPVPVSNKKFVFDDFILNMDGSLLR---SEKKVNIPPKEYAVLVILLEAAGEIVSK 57

Query: 69  NDLHDFVWREQGFEVDDSSLTQAISTLRKMLKDSTKSPQYVKTVPKRGYQ 118
           N L D VW +   EV++ SLT+ I  LR++L +  K  +Y++T+  +GY+
Sbjct: 58  NTLLDQVWGDA--EVNEESLTRCIYALRRILSED-KEHRYIETLYGQGYR 104