Pairwise Alignments

Query, 349 a.a., chitoporin from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., Outer membrane protein (porin) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 67/305 (21%), Positives = 122/305 (40%), Gaps = 48/305 (15%)

Query: 6   KRTLLGAAVAMASTGAFAASETGAIGVLSDF-----NVQAYGVAAISAFYQEDSNGYDYE 60
           K++L+  AV  +  G   A  +  +  L D        +  GV ++S       NG +  
Sbjct: 2   KKSLIALAVLGSVAGVAQAQSSVTMYGLVDVWAGRTKAEVPGVGSVSV------NGLNSG 55

Query: 61  N--ESRIGFRASKDMFDNVNVFMQIESGYVGEDGKGSTLGA--RDTFLGLQGDWGKVRFG 116
               SR G + S+D+   +    ++E G+   +G  +   A  R +++GL+G +G V+FG
Sbjct: 56  GLATSRWGVQGSEDLGGGLKAIFKLEQGFDASNGTATANTAFNRQSWVGLEGGFGTVQFG 115

Query: 117 RMLTPLYE-------IVDWPYSNPGLGRVFDWGGDVAGHYDRKGDIARYDSPAFGGLTFN 169
            + +   +       I D    +P    +      VA + D+  +  RY SP FGG +  
Sbjct: 116 NVWSAFDDVFYIGNSIFDAVAFSPAYAVM-----SVAAYNDKPRNALRYTSPNFGGFSAA 170

Query: 170 ISAGRGDVGTKSSNHFGAAAHYNAADI-VTFHVGYENNS-----NFKYDYKT-------- 215
           +S G  +      +       Y A  +   F    +N++     + K+ Y T        
Sbjct: 171 VSHGLDENALVKRDQTDFNLQYAAGPLTAAFAYQLQNDAAGVGQDAKFTYFTAAYDLGVA 230

Query: 216 --KDTAGKDVDNTFLTDATAYIVGFELPLPAGFGLAGAYKYTEGASKTVKGQEGEQGQYS 273
             K   G+   N + T    + +G + PL +   L+  Y     +SK   G + ++  YS
Sbjct: 231 VLKGGVGQ-TRNVYATKTNDWQIGADFPLSSALSLSTGY----ASSKDKDGTDTKRTGYS 285

Query: 274 LIGQY 278
           +   Y
Sbjct: 286 VGALY 290