Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 803 a.a., NAD-dependent DNA ligase LigA from Rhodanobacter sp000427505 FW510-R12

 Score =  565 bits (1455), Expect = e-165
 Identities = 303/615 (49%), Positives = 397/615 (64%), Gaps = 34/615 (5%)

Query: 2   SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
           ++   R   LR  + +   RY+V D P I DAEYDRLMREL  LEA +P L ++DSP+ +
Sbjct: 8   AETVARAAALRAQIEQANYRYHVLDDPDITDAEYDRLMRELEALEAEYPVLATADSPTRK 67

Query: 62  VGGRPLDAFESVVHEIPMLSLDNAFD-DG--------ELESFYRRMTDRIPAVQHSAFCC 112
           VG R    F  V H IPMLSL NAF+ DG        E+  F RR+ ++        F  
Sbjct: 68  VGARASGGFAEVRHAIPMLSLGNAFEQDGASDRERFREVAEFERRI-EQTTKRSEPVFSV 126

Query: 113 EPKLDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRG 172
           EPKLDGLA+SL YE+GV  + ATRGDG TGE++T N+RT+++IPL+L+G  +P  LEVRG
Sbjct: 127 EPKLDGLAISLRYEHGVFVQGATRGDGETGEDVTANLRTVRAIPLKLRGKGWPDVLEVRG 186

Query: 173 EVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEG 232
           EV M    FEA N  A K GEK   NPRN AAGSLRQLD  +TA+R L+F+AY+VG +EG
Sbjct: 187 EVIMLHKDFEAFNEHARKHGEKPLANPRNGAAGSLRQLDPAVTAKRRLSFFAYAVGEVEG 246

Query: 233 GELATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVD 292
           GEL  +H     QL+ WG P+ PE         + A+Y  I  +R SL Y+IDGVV K+D
Sbjct: 247 GELPPTHSATLRQLREWGFPVSPEVDTARGFDGLIAYYHRIGGKRDSLPYDIDGVVYKLD 306

Query: 293 DIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVT 352
           D   Q ++GFV+RAPRWAIA+KFPAQE+ T +  +E Q+GRTGA TPVA+L PV V GVT
Sbjct: 307 DYAGQRKMGFVSRAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLAPVQVAGVT 366

Query: 353 VSNATLHNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQ 412
           V+NATLHNAD++ RL V VGDTV++RRAGDVIP++V V++E RP +      P RCPVC 
Sbjct: 367 VTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVVRVMIELRPPHTHPWHMPARCPVCG 426

Query: 413 SDVERVEGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPA 472
           S++ R EGEA  RCSGGLIC AQRKEAL HF SR+AMD++GLG++  E LV+ ++V +PA
Sbjct: 427 SELLREEGEAAYRCSGGLICAAQRKEALIHFASRRAMDIDGLGERFAEALVELDIVHSPA 486

Query: 473 DLFRLRAGELTILER------------------------MGPKSAQNVIDALNKAKQTTL 508
           DL+ L   +   ++R                        +  K A+N++  +  +K TTL
Sbjct: 487 DLYGLGVDDFVEMKRRIDERKPAPAEAGGTAPETVKAGKVATKWAENLVAGIEASKHTTL 546

Query: 509 PKFLYALGIREVGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDR 568
            +FLYALGI  +GE+TA  LA     LE ++         +PD+G  VA+ +  FFAQ  
Sbjct: 547 ARFLYALGIMHIGESTAKTLAAWLGRLEFVRSTPAAVLRVLPDIGSEVATSIAGFFAQAG 606

Query: 569 NQQVINELLEQGITW 583
           N+QV++ LL  GIT+
Sbjct: 607 NEQVVDALLAAGITF 621



 Score = 87.4 bits (215), Expect = 2e-21
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 517 IREVGEATALNLAQHFLSLEAIQQASLEQFIE--VPDVGVV-VASHLQ--AFFAQDRNQQ 571
           I ++G  +   LAQHF +L+ +       +I   VP      + +HL      A+ R  +
Sbjct: 646 INKLGPKSCALLAQHFPTLDQLLSGGPAHWITAGVPQAAATSLQNHLADPVALARLREAE 705

Query: 572 VINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAKAALQALGAKVTGSV 631
              + L + I   A  A      + L G+  VLTG+   LSR++AK  L+ALGAKV+GSV
Sbjct: 706 AAMQRLLRAIPHSAKVAT-----APLQGQTFVLTGTLASLSRDEAKERLEALGAKVSGSV 760

Query: 632 SKNTDMVFAGEAAGSKLAKATELGIQVFDEQALI 665
           S+ T +V AGEAAGSKL KA ELG+ V+DE  L+
Sbjct: 761 SRKTSVVVAGEAAGSKLDKAQELGVPVWDEAQLL 794