Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 785 a.a., NAD-dependent DNA ligase LigA from Pseudomonas simiae WCS417

 Score =  631 bits (1627), Expect = 0.0
 Identities = 340/600 (56%), Positives = 417/600 (69%), Gaps = 30/600 (5%)

Query: 1   MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
           M+    R+ ELR  L +H  RY+V D PSIPDAEYDRL  EL  LEA HP+L++ DSP+ 
Sbjct: 1   MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ 60

Query: 61  RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIP-----------AVQHSA 109
           RVG   L AF  V HEIPMLSL NAFD+  +  F RR+T+ +            AV++S 
Sbjct: 61  RVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPAGDLFGGGAAVEYS- 119

Query: 110 FCCEPKLDGLAVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLE 169
             CEPKLDGLAVSLLY++G L R ATRGDGTTGE+I+ NVRT+++IPL+L G+ +P  LE
Sbjct: 120 --CEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPANLE 177

Query: 170 VRGEVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGV 229
           VRGEVFM KAGFE LNA  L+ G K F NPRNAAAGSLRQLDSKITA RPL F  Y V  
Sbjct: 178 VRGEVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTT 237

Query: 230 IEGGELATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVI 289
               +++ +H     QL+ WG+PI  E KL   + +   +Y+DI +RR SL YEIDGVV 
Sbjct: 238 ----DISDTHIGNLQQLQKWGMPISRELKLAKGIQDCLEYYRDIGERRNSLPYEIDGVVF 293

Query: 290 KVDDIQLQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVG 349
           KV+ I  Q  LGF AR PRWAIA+KFPA EELT L DVEFQVGRTGA+TPVA+L+PV V 
Sbjct: 294 KVNSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVA 353

Query: 350 GVTVSNATLHNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCP 409
           GVTVSNATLHN DE+ RLGVM+GDTV+IRRAGDVIPQ+VSVVLERRPENA+++  P  CP
Sbjct: 354 GVTVSNATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLERRPENARAVPIPQSCP 413

Query: 410 VCQSDVER------------VEGEAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDK 457
           VC S VER            V   AV RC G L C AQ K+A+ HFVSR+AMD++GLGDK
Sbjct: 414 VCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDK 473

Query: 458 VIEQLVDREMVSTPADLFRLRAGELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGI 517
            IEQLVD +++ +PADL++L+   +  LE     S++ +I A+  +K  TL +F+YALGI
Sbjct: 474 TIEQLVDEKLIGSPADLYKLKYEHIIDLEGFADISSKKLITAIENSKSPTLARFIYALGI 533

Query: 518 REVGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELL 577
            +VGE TA  LA+   SLE +Q+A  E    +PDVG+ VA  + +FF    NQ VI  LL
Sbjct: 534 PDVGEETAKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALL 593



 Score = 89.0 bits (219), Expect = 8e-22
 Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 503 AKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQAS-LEQFIEVPDVGVVVASHLQ 561
           A  TTL   L  L +  VG   A  LA  F++LE + +A  L+    +P+     A  ++
Sbjct: 613 AASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQALPEKQ---AKAVR 669

Query: 562 AFFAQDRNQQ----VINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDAK 617
            FF    N      +  +L + G+ W +     V      AG   VLTGS   +SR+ AK
Sbjct: 670 EFFDNADNAHRALAIEQQLKDFGMHWDS--EKKVVEGLPEAGHTWVLTGSLELMSRDVAK 727

Query: 618 AALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFL 668
             L++LGAKV GSVS  T  V AG  AGSKL KA+ELG++V DE+A + FL
Sbjct: 728 EKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKASELGLKVLDEEAFVAFL 778