Pairwise Alignments

Query, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

Subject, 724 a.a., DNA ligase from Agrobacterium fabrum C58

 Score =  556 bits (1433), Expect = e-162
 Identities = 319/705 (45%), Positives = 431/705 (61%), Gaps = 50/705 (7%)

Query: 3   DVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRV 62
           + +  L  L   L  H   Y+ +DAP I DA+YD L R    +EAA P L+ +DSPS +V
Sbjct: 15  EASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPALVRADSPSKKV 74

Query: 63  GGRPLDAFESVVHEIPMLSLDNAFDDGELESFYR---RMTDRIPAVQHSAFCCEPKLDGL 119
           G  PL  F  +VH  PMLSLDN F + +L  F     R    +P     AF  EPK+DGL
Sbjct: 75  GFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPD-DSIAFTAEPKIDGL 133

Query: 120 AVSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKA 179
           ++S+ YEN  L  AATRGDGTTGEN+T N+RTIK IP  L  AD P  +EVRGEV+M K+
Sbjct: 134 SMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELP-ADAPDVVEVRGEVYMAKS 192

Query: 180 GFEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGG----EL 235
            F ALNA+    G++ +VNPRN A+GSLRQLD+ +TA+R L F+AY++G +  G     +
Sbjct: 193 DFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYALGEVSNGGQPARI 252

Query: 236 ATSHYQRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQ 295
           A + Y    + + WG P+ P  K  TS  ++   Y +I   R  L Y+IDGVV KVD + 
Sbjct: 253 ADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYDIDGVVYKVDRLD 312

Query: 296 LQERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSN 355
           LQERLGF +R+PRWA A+KFPA++  T + ++E QVGRTGA+TPVA+L P+ VGGV V+N
Sbjct: 313 LQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARLTPITVGGVVVTN 372

Query: 356 ATLHNADEIERLG------------VMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIV 403
           ATLHNAD IE +G            + +GDTV+++RAGDVIPQ++ V+LE+R   A   V
Sbjct: 373 ATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVLLEKRAAGAAKYV 432

Query: 404 FPTRCPVCQSDVERVEGE------AVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDK 457
           FP +CPVC S   R   E      +V RC+GG +C+AQ  E LKHFVSR A D+EGLG K
Sbjct: 433 FPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGTK 492

Query: 458 VIEQLVDRE----MVSTPADLFRLR----AGELTILERM---GPKSAQNVIDALNKAKQT 506
            I+   + +     + T  D+F L+    A  LT LE +   G  S + + DA++  +  
Sbjct: 493 QIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVKKLFDAIDARRAI 552

Query: 507 TLPKFLYALGIREVGEATALNLAQHFLSLEAIQQA----------SLEQFIEVPDVGVVV 556
            L + ++ALGIR VGE TA  LA+ + + E  ++A          +  +   +  +G VV
Sbjct: 553 DLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPASDAWAELNSIDGIGEVV 612

Query: 557 ASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGKIVVLTGSFTQLSRNDA 616
           A  +  F+ + RN  VI+ L+ +    P     P    S +AGK VV TGS  + +R++A
Sbjct: 613 ARAIIEFYKEPRNLDVIDRLIRE--LQPKEAEKPSTEGSPVAGKTVVFTGSLEKFTRDEA 670

Query: 617 KAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDE 661
           KA  ++LGAKV GSVSK TD++ AG  AGSKLAKATELG+Q  DE
Sbjct: 671 KARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDE 715