Pairwise Alignments

Query, 474 a.a., tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase from Xanthobacter sp. DMC5

 Score =  421 bits (1081), Expect = e-122
 Identities = 219/441 (49%), Positives = 298/441 (67%), Gaps = 9/441 (2%)

Query: 3   KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62
           +KL +K++GCQMN YDS +MAD L A  G+  T+ P EAD+++LNTC IREKA EKV+ +
Sbjct: 31  RKLYVKSFGCQMNVYDSHRMADTL-AREGFVETQDPAEADLVILNTCHIREKAAEKVYSE 89

Query: 63  LGRWKTLKDKKPG-VVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTS 121
           LGR +  K +     +I V GCVA  EG  I  RAP VDV+ GPQ+ HRLPE++ +++  
Sbjct: 90  LGRLRKQKQEAGSDTMIAVAGCVAQAEGAEIMRRAPVVDVVVGPQSYHRLPELLAEAKAG 149

Query: 122 DAPVMDISFPEIEKFDRLPEP-----RAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSR 176
              V+D  FP  +KFD LP P     R+ GP AFV++ EGC K+CT+CVVPYTRG EVSR
Sbjct: 150 KR-VVDTEFPAEDKFDHLPAPTRAATRSRGPAAFVTVQEGCDKFCTFCVVPYTRGAEVSR 208

Query: 177 PMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRF 236
           P+  +L E A+L +QGVRE+ L+GQNVNA+ G   DG + S A L+  +A + G+ R+R+
Sbjct: 209 PVTKILDEAARLLDQGVREITLIGQNVNAFHGEGPDGKVWSLARLMERLAQMKGLARLRY 268

Query: 237 TTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKA 296
           TTSHP +  +D+IA + D P+L+ +LHLPVQSGSDRIL  M R H    + S+I K+R A
Sbjct: 269 TTSHPRDMGEDLIAAHRDLPQLMPYLHLPVQSGSDRILAAMNRKHGRDLFLSLIEKMRDA 328

Query: 297 RPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEE 356
           RPD+ +SSDFIVGFPGETD+DF+DT+ L+R+V F  ++SF +S RPGTPAA++   ++EE
Sbjct: 329 RPDLALSSDFIVGFPGETDRDFEDTLDLVREVGFASAYSFKYSSRPGTPAAEHDAQVAEE 388

Query: 357 VKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSP 416
           VK ERL ELQ+ + +    +     G    IL+E P ++   +L GR+   + V     P
Sbjct: 389 VKTERLAELQKLLEASKAAFDAACRGRTFDILLEKPGRQP-GQLIGRSPYLQSVVVNDPP 447

Query: 417 DLIGQFVDVKIVDVFPNSLRG 437
             IG+ + V I DV PNSL G
Sbjct: 448 AGIGELLTVTITDVGPNSLAG 468