Pairwise Alignments

Query, 474 a.a., tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., miaB protein from Agrobacterium fabrum C58

 Score =  394 bits (1012), Expect = e-114
 Identities = 213/447 (47%), Positives = 289/447 (64%), Gaps = 12/447 (2%)

Query: 2   SKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFH 61
           S+K+ IKT+GCQMN YDS +M+D L A +GY  TE   EAD++LLNTC IREKA EKV+ 
Sbjct: 9   SRKVFIKTYGCQMNVYDSVRMSDAL-AKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYS 67

Query: 62  QLGRWKTLKDKKPG----VVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQ 117
            LGR + +K  +       +IGV GCVA  EG+ I  RAP VDV+ GPQT HRLP+ +K+
Sbjct: 68  ALGRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKR 127

Query: 118 SQTSDAPVMDISFPEIEKFDRLPEP-----RAEGPTAFVSIMEGCSKYCTYCVVPYTRGE 172
            +  +  V++  +   +KF+ LP       R+ G TAF+++ EGC K+CT+CVVPYTRG 
Sbjct: 128 VRRGER-VIETEYAVEDKFEHLPVAEKATLRSRGVTAFLTVQEGCDKFCTFCVVPYTRGS 186

Query: 173 EVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGID 232
           EVSRP+  ++ E  +L + GVRE+ LLGQNVNA++G    G     AELL  +A I G+ 
Sbjct: 187 EVSRPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGLA 246

Query: 233 RIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRK 292
           R+R+TTSHP +  D +I  + D   L+ +LHLPVQSGSDRIL  M R HT  EY  +I K
Sbjct: 247 RLRYTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEK 306

Query: 293 LRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCD 352
           +R ARPDI +S DFIVGFPGETD+DF+DTM ++  V +  +FSF +S RPGTP AD    
Sbjct: 307 IRSARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTDQ 366

Query: 353 LSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNF 412
           ++E+VK ERL  LQ  +  Q   ++  ++G    +L+E P +    +L GR+   + VN 
Sbjct: 367 VAEDVKAERLERLQALLLRQQKEFAESLVGKTMDVLLEKPGRMP-EQLIGRSPWLQSVNL 425

Query: 413 EGSPDLIGQFVDVKIVDVFPNSLRGEL 439
           +     IG  V+V+I    PNSL  E+
Sbjct: 426 DAKTLKIGDIVNVRITATGPNSLFAEV 452