Pairwise Alignments

Query, 342 a.a., DNA polymerase III subunit delta from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., DNA polymerase III delta subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  148 bits (373), Expect = 2e-40
 Identities = 110/349 (31%), Positives = 170/349 (48%), Gaps = 22/349 (6%)

Query: 1   MRIYAEKLAESLHKTLYPIYLVFGNEPLLLQEAKTAIEKTAQAQGFLEKHRFS-ADAGLD 59
           M++ +  L   L K L P+Y + G+EPLL QEA  AI   A+AQG+ E+  ++ A A  D
Sbjct: 1   MQLASASLGAHLQKGLKPLYTIHGDEPLLAQEAADAIRTAARAQGYTERSSYTVAGAHFD 60

Query: 60  WNAVYDCCQALSLFSSRQLIEIEIPESGVNAQTAKELSALVGQL------HQDILLLVIG 113
           W+AV     +LSLF+ +Q++EI IP    + +  K+ SA + QL      +   L LV+ 
Sbjct: 61  WSAVLAAGGSLSLFADKQIVEIRIP----SGKPGKDGSAALQQLAESAPGNDSTLTLVML 116

Query: 114 PKLTKAQENAAWFKTLAQQACWVNCLTPELSRLPQFVQQRCFALG--LKPDAE---AVQM 168
           P+L KA    AWF  L      +     E + LPQ++ QR    G  + P  E    +Q 
Sbjct: 117 PRLDKATRTGAWFSALENNGASIQVDPIERNALPQWIAQRLGQQGQRVMPGDEGQRTLQF 176

Query: 169 LAQWHEGNLFALAQSLEKLALLYPDGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRA 228
            A   EGNL A  Q ++KLALL+P G L+  ++E +++    +  +   +A+L G   R 
Sbjct: 177 FADRVEGNLLAAHQEIQKLALLHPAGELSWEQVEGAVNNVARYDVFKLSEAVLAGNPQRV 236

Query: 229 QRILRQLMLEESEPIILIRTAQKELTQLLKWQQERQQLGNLGSLFDRYRVWQNRRPLYSA 288
            R+L  L  E    +++  T  +++  L + +        L       R+W  R   +  
Sbjct: 237 ARMLDGLQAEGEAEVLVHYTIAEDIRALKRVKDAMASGRPLPMALRENRIWGPRERAFER 296

Query: 289 ALQRLPSRALLRLVGILTQAELLAKTQYEQPVWP-----ILQQLSLECC 332
            L RL  R L RL+      + + K   +QP WP      LQ+L+L  C
Sbjct: 297 VLPRLDDRMLTRLLRAAHVVDGIVK-GLKQPDWPASGWQALQRLALMLC 344