Pairwise Alignments

Query, 156 a.a., 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH from Vibrio cholerae E7946 ATCC 55056

Subject, 155 a.a., 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) from Variovorax sp. SCN45

 Score =  144 bits (363), Expect = 6e-40
 Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 1   MKIQLIAVGTKMPKWVEEGFQEYRRRFPHDMPLELVEITAGKRGKNADIARILQKEGEAM 60
           MK+ ++AVG +MP W +  + +Y +RFP ++ LEL  +    RG  + +  +   E E +
Sbjct: 1   MKLLVVAVGQRMPDWAQTAWDDYAKRFPPELKLELRAVKTEPRGSKS-LETLYAAERERI 59

Query: 61  LAAVPKGNRIVTLDIPGKRWDTEELAVQLESWKLDGRDVSILIGGPEGLAPACKAAADQS 120
             A+ +G RIV LD  G    T+ LA +L+SW+ +G DV+++IGGP+GL PA KAAA + 
Sbjct: 60  EGAIARGMRIVVLDERGTALTTKALAARLQSWQGEGDDVALVIGGPDGLDPAFKAAAHER 119

Query: 121 WSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYHRE 156
             LS LTLPH + RV++ E LYRAWS+   HPYHRE
Sbjct: 120 IRLSDLTLPHAMARVLLVEQLYRAWSVNAGHPYHRE 155