Pairwise Alignments

Query, 156 a.a., 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH from Vibrio cholerae E7946 ATCC 55056

Subject, 155 a.a., 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH from Variovorax sp. OAS795

 Score =  143 bits (360), Expect = 1e-39
 Identities = 69/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 1   MKIQLIAVGTKMPKWVEEGFQEYRRRFPHDMPLELVEITAGKRGKNADIARILQKEGEAM 60
           MK+ ++AVG +MP W +  + +Y +RFP ++ LEL  +    RG  + +  +   E E +
Sbjct: 1   MKLLVVAVGQRMPDWAQTAWDDYAKRFPPELKLELRAVKTEPRGSKS-LETLYAAERERI 59

Query: 61  LAAVPKGNRIVTLDIPGKRWDTEELAVQLESWKLDGRDVSILIGGPEGLAPACKAAADQS 120
             A+ +G RIV LD  G    T+ LA +L++W+ +G DV+++IGGP+GL PA KAAA + 
Sbjct: 60  EGAIARGMRIVALDERGTALTTKALAARLQAWQGEGDDVALVIGGPDGLDPAFKAAAHER 119

Query: 121 WSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYHRE 156
             LS LTLPH + RV++ E LYRAWS+   HPYHRE
Sbjct: 120 IRLSDLTLPHAMARVLLVEQLYRAWSVNAGHPYHRE 155