Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

 Score =  481 bits (1237), Expect = e-140
 Identities = 252/623 (40%), Positives = 378/623 (60%), Gaps = 25/623 (4%)

Query: 6   TPIRDHQAETHLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVVPI 65
           T IR+  A+   F+ R IV  + +L   GLL   L  +Q+ +++D   ++  NR  VVP+
Sbjct: 2   TEIRNVAADLARFKRRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPV 61

Query: 66  APNRGLIFDRNGVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFEKERK 125
            PNRGLI DRNG++LA N   + LE+ P KV ++EETI  L Q++EISP     F++ R+
Sbjct: 62  VPNRGLILDRNGIVLASNYSAYTLEITPSKVGDVEETIDSLTQVLEISPRDRRRFKRLRE 121

Query: 126 QTRRFNSVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRIND 185
            +R F+S+P+ T+L+D+EVA+F+  +++FPGV + A L R YP GE+ +HV+GY+ RIN 
Sbjct: 122 DSRSFDSIPIRTRLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQ 181

Query: 186 KDLERLD--KEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYV 243
           ++   ++   E ++ANY+ T  IGKLGIE+ YE  LHG  G +++E ++ GR +R L   
Sbjct: 182 REKTAMEDWDEEEQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASH 241

Query: 244 PPIPGKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGIS 303
           P  PG  ++L+LDI+LQ     +   RRG++VA+DPK   VLA  S P++DPN FV GI 
Sbjct: 242 PATPGNTVMLSLDIKLQKLVEDMFGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGID 301

Query: 304 GKAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRIPN 363
            ++++ L     +PL+NR   G YPPGST KPF+A++ALQ G   P+   NDPGY+    
Sbjct: 302 NESWAALTESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFGG 361

Query: 364 TDTRPFRDWLRWGH-----GRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDL 418
                     R+G      G VD+ ++++ S + +FY +A +MG+D +   M   GFG +
Sbjct: 362 H---------RFGSPEGNLGGVDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQI 412

Query: 419 TGIDIYEESKANMPTREWKMARHKVP----WYQGDTIPVGIGQGYWTATPMQIAKATSVL 474
           TGID+  E +  +P+ EWK   +K P    WY G+TI +GIGQGY   T +Q+A+AT+++
Sbjct: 413 TGIDLGGEVRGVLPSTEWKRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIV 472

Query: 475 VNHGKVIAPHLLRATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKG 534
            + G    PHL+ AT     + +   +      PP + +      +++    L +    G
Sbjct: 473 ADGGLKHKPHLVLAT-----RNTVSGQVVPMPQPPAENLGYTASAISVIREGLTSVVTSG 527

Query: 535 TARRAFQNMPYESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVT 594
           TAR  F    Y++AGK+GTAQ    A+  KYNA  L EH  DHALF GFAPV DPK+ + 
Sbjct: 528 TARGVFAGAAYQAAGKTGTAQAVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIA 587

Query: 595 FVLENGGGGSSNGAPVVRQIFDH 617
            ++EN G G+   AP+ R++FD+
Sbjct: 588 VIVENAGWGAGAAAPIARRVFDY 610