Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

 Score =  567 bits (1460), Expect = e-166
 Identities = 294/649 (45%), Positives = 413/649 (63%), Gaps = 34/649 (5%)

Query: 2   LRQHTPIRDHQAETHLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIK 61
           + Q   ++DH+ +  L R R +V  V I++ + +L+  LY +QI QY  + T S +NR+ 
Sbjct: 1   MSQPIRLKDHEKDARLVRKRVVVGAVAIMLLVCVLIARLYYLQIIQYDYHSTLSENNRVH 60

Query: 62  VVPIAPNRGLIFDRNGVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFE 121
           V PI P RGLIFDRNGV++A+NRP F+L +  E+  N +E +  + ++++++ +  A FE
Sbjct: 61  VQPIPPTRGLIFDRNGVIVADNRPSFSLSMTRERAGNWQEVLDTIVEVLDLTADDRALFE 120

Query: 122 KERKQTRR-FNSVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYV 180
           K  +Q RR F  VP+L +L ++++A+ +VNQ + PGV V A L R+YP G    H +GYV
Sbjct: 121 KRMRQGRRPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYV 180

Query: 181 SRINDKDLERLDKEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTL 240
            RIN+K+L+ LD      NY  T  IGK GIER+YE  LHG  GY+EVE N+RGRV+R L
Sbjct: 181 GRINEKELKTLDP----VNYSGTHHIGKTGIERFYEAALHGQVGYEEVETNARGRVLRVL 236

Query: 241 KYVPPIPGKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVH 300
           K   P PGKDIVL+LDI+LQ  A   L GRRG++VALDP+   VLAM S PS+DPN FV 
Sbjct: 237 KRTDPKPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVT 296

Query: 301 GISGKAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWR 360
           GIS KAY++L +   RPL NR   G+YPPGST+KP +A++ L  G++  ++   DPGY++
Sbjct: 297 GISFKAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQ 356

Query: 361 IPNTDTRPFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTG 420
           +PN D + +R+W R G G VD+  ++  S DT+FY +A+ MGID+LSS+M +FG G    
Sbjct: 357 LPNYDHK-YRNWNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDRLSSYMNKFGIGQRVS 415

Query: 421 IDIYEESKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKV 480
           +D++EES   MP+REWK A  +  W+ G+T+ +GIGQGY  ATP+Q+A+AT+++ N G  
Sbjct: 416 LDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVW 475

Query: 481 IAPHLLRATIDNGEQFSTQKETEYTTYPPIDGVP--------KKYWDMAIHGMYLVNHGA 532
             PHL + TI+                PP+D  P        K  W    HGM  V H A
Sbjct: 476 NRPHLAK-TIEG--------------LPPVDDNPMEDIVLRDKSDWAKVTHGMEQVMHNA 520

Query: 533 KGTARRAFQNMPYESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVI 592
           +GTAR+A     Y  AGKSGTAQV  + +G+KY+ ++L E   DHALF  FAP + PK++
Sbjct: 521 RGTARKAAAGAQYRIAGKSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIV 580

Query: 593 VTFVLENGGGGSSNGAPVVRQIFDHVILG-----KKEEEPKAESKEEVI 636
           V+ ++ENG  GS   APVVRQI D  +L      K E  P   ++E  +
Sbjct: 581 VSVMVENGESGSGVAAPVVRQIMDAWLLDENGRLKPEFAPATVTQESAL 629