Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

 Score =  498 bits (1281), Expect = e-145
 Identities = 258/622 (41%), Positives = 373/622 (59%), Gaps = 14/622 (2%)

Query: 4   QHTPIRDHQAETHLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVV 63
           Q  P++DH+ E HL   R +     +     +LV  LY +Q+ Q+      S +NR+ V+
Sbjct: 3   QPIPLKDHEKEKHLVNRRLLACAAMVFSLCAVLVGRLYVLQVLQHDQQTAVSENNRVHVL 62

Query: 64  PIAPNRGLIFDRNGVLLAENRPVFNLEVIPEKVP-NMEETIARLQQLIEISPEKLAAFEK 122
           PIAP RGLI+DRNGV+LA+N+P F+L +  E+   +  + +  L Q++ ++ +    F+K
Sbjct: 63  PIAPERGLIYDRNGVVLADNKPSFDLTMTRERAGGDSAKVLDTLTQVLGLTEDDRKQFDK 122

Query: 123 ERKQTRR-FNSVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVS 181
           + ++ R+ F  V L+  L+++++A  +VNQ + PG+ V     R YP      H +GYV 
Sbjct: 123 DLRRGRKPFEPVTLMVGLSEEQIALVAVNQFRLPGLEVEPQFIREYPLAGHFAHSVGYVG 182

Query: 182 RINDKDLERLDKEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLK 241
           RIN+K+ + LD       Y+ T+ IGK GIER+YE  LHG  GY+EVE N++GRV+R L 
Sbjct: 183 RINEKEAKTLDS----TEYRGTQSIGKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLN 238

Query: 242 YVPPIPGKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHG 301
           +  P PG+DIVL LD  LQ+ A K L  RRGS+V LDP +  VLAM S+PS+DPN FV G
Sbjct: 239 HKDPTPGQDIVLTLDAHLQIAAEKALGDRRGSVVVLDPANGDVLAMVSNPSFDPNLFVKG 298

Query: 302 ISGKAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRI 361
           IS K Y+ L +   RPL NR   G+Y PGSTVKP +A++ L  G+ITP +   DPGY+ +
Sbjct: 299 ISFKQYAALRDSIDRPLFNRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYEL 358

Query: 362 PNTDTRPFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGI 421
           PN D + +R+W R G G VD+  ++  S DT+FY +A+ +GID+L  +M  FG G    +
Sbjct: 359 PNYDHK-YRNWNRSGDGWVDMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSL 417

Query: 422 DIYEESKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVI 481
           D++EE+   MP+ EWK A  +  W+ G+T+ +GIGQGY   TP+Q+A+ATS+L + G   
Sbjct: 418 DMFEEASGLMPSAEWKRATRRQAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWH 477

Query: 482 APHLLRATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTARRAFQ 541
            PHL                 +    P I    K  WD    GM +V H  +G AR A  
Sbjct: 478 RPHLAMTV-------GGDTPIDPNPMPDIVLHDKHAWDQVSQGMQMVMHDPRGIARAAAA 530

Query: 542 NMPYESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVLENGG 601
              Y  AGKSGTAQV  + +G++YN ++  E   D+ALF GFAP + P V+V  ++ENG 
Sbjct: 531 GAQYRIAGKSGTAQVVAIKQGERYNRNKTLERHRDNALFVGFAPAEHPSVVVAVMIENGE 590

Query: 602 GGSSNGAPVVRQIFDHVILGKK 623
            G     PVVR++ D  +L ++
Sbjct: 591 AGGRVAGPVVREVMDAYLLDEQ 612