Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., peptidoglycan DD-transpeptidase MrdA from Dickeya dadantii 3937

 Score =  752 bits (1941), Expect = 0.0
 Identities = 366/620 (59%), Positives = 464/620 (74%), Gaps = 8/620 (1%)

Query: 4   QHTPIRDHQAETHLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVV 63
           +  P RD+ AE  LF  RA+V+F+GIL+  G+LV NLY++Q++++ DY+TRSN+NRIK+V
Sbjct: 4   ERKPFRDYTAEAALFVRRALVAFLGILLLSGILVANLYHLQVSRFDDYRTRSNENRIKLV 63

Query: 64  PIAPNRGLIFDRNGVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFEKE 123
           PIAP+RG+I+DRNG  LA NR ++ LE+IPEKV N+EET+  L+ +I+++ E +  F KE
Sbjct: 64  PIAPSRGIIYDRNGTPLALNRTIYQLELIPEKVNNLEETLQALKSIIDLTDEDIDNFRKE 123

Query: 124 RKQTRRFNSVPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRI 183
           RK++RRF S+P+ T L + +VA F+VNQ++FPGV V    +RYYPYG  LTHVIGYVS+I
Sbjct: 124 RKRSRRFTSIPVKTGLNEVQVASFAVNQYRFPGVEVKGYQRRYYPYGAALTHVIGYVSKI 183

Query: 184 NDKDLERLDKEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYV 243
           NDKDLERLD+EGK  +Y AT DIGKLGIERYYED+LHG  GY+EVEVN+RGRVIR L   
Sbjct: 184 NDKDLERLDQEGKLPDYAATHDIGKLGIERYYEDVLHGKPGYEEVEVNNRGRVIRQLHEQ 243

Query: 244 PPIPGKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGIS 303
           PP  GKDI L LD+ LQLY  KLL G R ++V  DPKD  +LAM S+PSYDPN FV GIS
Sbjct: 244 PPQAGKDIYLTLDLNLQLYIEKLLAGSRAAVVVTDPKDASILAMVSTPSYDPNLFVDGIS 303

Query: 304 GKAYSDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRIPN 363
            K Y  LLND  RPL+NR T G+YPP STVKP+IAVSAL   +ITP T+  DPG+W++P 
Sbjct: 304 SKTYHALLNDPNRPLINRATQGVYPPASTVKPYIAVSALSANVITPYTSLFDPGWWQLPG 363

Query: 364 TDTRPFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGIDI 423
           ++ R FRDW +WGHGR+++ KSLEES DTFFYQ+AYDMGID+LS WM +FG+G  TGID+
Sbjct: 364 SEKR-FRDWKKWGHGRLNLTKSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHRTGIDL 422

Query: 424 --YEESKANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVI 481
              EES   MPTREWKM R+K PWYQGDTIPVGIGQGYWTATP+Q+ KA + L+N G+V 
Sbjct: 423 SDKEESPGIMPTREWKMKRYKKPWYQGDTIPVGIGQGYWTATPIQMLKALTTLINDGQVK 482

Query: 482 APHLLRATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTARRAFQ 541
           APHLL +T +N    +TQ       +  I  +   YW++   GMY V +   GTA + F 
Sbjct: 483 APHLLSSTQEN----NTQVPYRQQEHQQIGDIRSGYWEIVKDGMYGVANRQNGTAHKFFA 538

Query: 542 NMPYESAGKSGTAQVFGLAEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVLENGG 601
           + PY+ A KSGTAQVFGL E + YNA+ +AE L DH L T FAP  +PKV ++ +LENGG
Sbjct: 539 DAPYKIAAKSGTAQVFGLKENETYNANRIAERLRDHKLMTAFAPYNNPKVAMSIILENGG 598

Query: 602 GGSSNGAPVVRQIFDHVILG 621
            G + G+ +VRQI DH+ILG
Sbjct: 599 AGPAVGS-IVRQILDHIILG 617